Solid Tumor Molecular Diagnostics — Molecular Profiling, ctDNA, MRD, TMB, Fusion and Related Testing
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Defines use, coding, and considerations for molecular profiling of known or suspected solid tumors (including MRD, TMB, fusion testing, ctDNA) for providers ordering or billing these tests.
NTRK fusion testing criteria expanded to include all metastatic, progressive, advanced, inoperable, or unknown solid tumors and added recurrent or metastatic vaginal cancer as a covered cancer type.
Tumor-specific RET gene rearrangement (FISH) coverage expanded to add multiple tumor types consistent with NCCN guidelines (including esophageal, gastric, vaginal cancers).
EGFR, BRAF, and KRAS ctDNA criteria were revised to remove previously required ancillary testing or therapy conditions (e.g., removal of EGFR TKI therapy requirement and removal of NRAS/KRAS testing requirements).
A new criteria section for Broad RNA Fusion Panels for Solid Tumors was added.
Tumor-specific glioma MGMT methylation criteria condensed to 'high-grade (grade 3 or 4) glioma' rather than enumerating subtypes.
Signatera MRD testing criteria updated to add ovarian cancer and change a metastatic breast cancer indication to neoadjuvant breast cancer for a specific criterion.
Lung cancer ctDNA panel language updated to use 'metastatic' instead of 'stage IV or metastatic' and added 'neuroendocrine' to a criterion.
IDH2 variant analysis criteria were split into solid-tumor specific and hematologic specific sections, with hematologic addressed elsewhere.
Circulating Tumor Cell (CTC) enumeration was clarified as not supported by current evidence for all indications.
Coverage Criteria — Molecular & Genomic Testing for Solid Tumors
Tumor-Type Agnostic Solid Tumor Molecular Profiling Panels - Initial
Covered when ALL of the following are met
Tumor-Type Agnostic Solid Tumor Molecular Profiling Panels - Additional Indications
Covered when ANY of the following tumor-specific situations are met
Tumor-Type Agnostic Panels - Repeat Testing
Repeat testing considered medically necessary when ALL of the following are met
Targeted RNA Fusion Panels (5-50 genes)
Targeted RNA fusion panels (5-50 genes) are considered medically necessary when:
Broad RNA Fusion Panels (≥51 genes)
Not supported
Colorectal Cancer Focused Molecular Profiling Panels
Colorectal cancer focused panels are considered medically necessary when ALL of the following are met
Lung Cancer Focused Molecular Profiling Panels
Lung cancer focused panels are considered medically necessary when ALL of the following are met
Cutaneous Melanoma Focused Molecular Profiling Panels
Cutaneous melanoma focused panels are considered medically necessary when ALL of the following are met
Tumor Specific BRAF Variant Analysis
Tumor specific single-gene (BRAF) analysis is medically necessary when ANY of the following diagnoses are present
Tumor Specific BRCA1/2 Variant Analysis
Tumor specific BRCA1/2 variant analysis is medically necessary when ANY of the following diagnoses are present
Tumor Specific EGFR Variant Analysis
Tumor specific EGFR variant analysis is medically necessary when ANY of the following diagnoses are present
Tumor Specific FOLR1 Protein Analysis
Tumor specific protein/IHC analysis is medically necessary when ALL of the following are met
Tumor Specific IDH1 and IDH2 Variant Analysis
Tumor specific IDH1/IDH2 variant analysis is medically necessary when ANY of the following are present
Tumor-specific FOLR1 IHC
Tumor-specific FOLR1 protein analysis covered when ALL of the following are met
Tumor-specific FOLR1 protein expression analysis via IHC considered medically necessary.
Tumor-specific IDH1/2
Tumor-specific IDH1/2 variant analysis covered when ALL of the following are met
Tumor-specific IDH1 and IDH2 variant analysis in solid tumors considered medically necessary for glioma.
Tumor-specific KIT
Tumor-specific KIT variant analysis covered when ALL of the following are met
Eligibility includes sex/menopausal status and prior therapy requirements.
Tumor-specific KRAS
Tumor-specific KRAS variant analysis covered when ANY of the following are met
Multiple tumor-type indications listed.
Tumor-specific MGMT methylation
Tumor-specific MGMT promoter methylation analysis covered when ALL of the following are met
MGMT promoter methylation analysis indicated for high-grade glioma.
Tumor-specific MLH1 methylation
Tumor-specific MLH1 promoter methylation analysis covered when ALL of the following are met
MLH1 methylation testing contingent on prior IHC loss of MLH1.
Tumor-specific MSI
Tumor-specific MSI analysis covered when ANY of the following diagnoses are present
Extensive list of tumor types where MSI analysis is medically necessary.
Tumor-specific NRAS
Tumor-specific NRAS variant analysis covered when ALL of the following are met
NRAS testing limited to metastatic colorectal cancer.
Tumor-specific PD-L1
Tumor-specific PD-L1 protein analysis via IHC covered when ALL of the following are met
PD-L1 IHC often performed as adjunct to comprehensive molecular profiling.
Tumor-specific PIK3CA
Tumor-specific PIK3CA variant analysis covered when ANY of the following are met
PIK3CA testing indicated in these settings.
Tumor Mutational Burden (TMB)
Tumor mutational burden (TMB) testing covered when ALL of the following are met
TMB restricted to late-stage/progressed disease excluding CNS cancers.
Evidence-Based MRD (cfDNA)
Evidence-based MRD via cfDNA covered when ALL of the following are met
Specifies assay-specific tumor indications and monitoring contexts.
Emerging Evidence MRD (tissue)
Emerging evidence MRD statement
Tissue-based MRD not supported outside demonstrated indications.
HPV-related MRD (cfDNA)
HPV-related MRD via cfDNA covered when ALL of the following are met
Specific to HPV-driven oropharyngeal cancers.
Broad ctDNA molecular profiling
Broad molecular profiling panel tests via ctDNA covered when ALL of the following are met
Extensive tumor-type list and limitation when ctDNA is done concurrently with tissue testing.
Lung-focused ctDNA panels
Lung cancer focused ctDNA panels covered when ANY of the following are met
Lung-focused ctDNA panels limited to advanced/metastatic lung cancers.
EGFR via ctDNA
EGFR variant analysis via ctDNA covered when ANY of the following are met
EGFR ctDNA testing limited to advanced/metastatic lung cancer types.
BRAF via ctDNA
BRAF variant analysis via ctDNA covered when ANY of the following are met
BRAF ctDNA is investigational for other indications.
KRAS via ctDNA
KRAS variant analysis via ctDNA covered when ANY of the following are met
KRAS ctDNA not supported for other indications.
BRAF variant analysis via ctDNA — medically necessary indications
Considered medically necessary when ANY of the following tumor-specific conditions are met:
From policy: chunk 54
KRAS variant analysis via ctDNA — medically necessary indications
Considered medically necessary when ANY of the following are met:
From policy: chunk 55
PIK3CA variant analysis via ctDNA — medically necessary indications
Considered medically necessary when ALL of the following are met:
From policy: chunk 56
AR-V7 CTC analysis — medically necessary indications
Considered medically necessary when ALL of the following are met:
From policy: chunk 57
Tumor-specific ALK rearrangement testing — medically necessary indications
Considered medically necessary when the member has any of the listed tumor diagnoses (initial workup or diagnosis):
From policy: chunk 59
ERBB2 (HER2) amplification testing (IHC/ISH) — medically necessary indications
Considered medically necessary when the member has ANY of the listed tumor types:
From policy: chunk 61
NTRK / RET / ROS1 tumor-specific testing — medically necessary indications
Each gene rearrangement test is medically necessary for the tumor types listed below:
From policy: chunk 62
From policy: chunk 63
From policy: chunk 64
Bladder cancer FISH testing — medically necessary indications and frequency limits
Considered medically necessary for diagnostic evaluation of hematuria when other diagnostics fail, and for monitoring after bladder cancer treatment with specified frequency limits:
From policy: chunk 60
Guideline-linked covered indications
Covered when aligned with NCCN/ASCO guideline recommendations for the specific tumor and clinical context
Re-testing upon progression on targeted therapy may be warranted.
Testing can be on primary tumor or metastasis.
IHC or PCR acceptable for some histiocytic diagnoses.
ASCO supports somatic BRCA testing in epithelial ovarian cancer when germline negative.
MSI recommended for occult primary workup as well.
Tumor-specific NRAS (RAS) testing
Covered when ALL of the following are met
Supports coverage when performed per NCCN guidance.
Tumor-specific PD-L1 protein analysis
Covered when ALL of the following are met
Coverage aligned to NCCN indications and FDA-approved companion diagnostics.
PIK3CA variant analysis
Covered when ALL of the following are met
Coverage when consistent with NCCN indications.
Tumor Mutational Burden
Covered when ALL of the following are met
Coverage aligned to NCCN and FDA label when test is FDA-approved for determining TMB-H.
MRD testing – evidence and coverage conditions
Covered when ALL of the following are met
Tests lacking demonstrated analytic/clinical validity or guideline support do not meet coverage threshold.
Broad ctDNA molecular profiling
Covered when ALL of the following are met
Coverage supported when tissue is unavailable or infeasible and testing is consistent with NCCN recommendations.
Broad molecular profiling via ctDNA
Covered when NCCN recommends comprehensive molecular profiling and tissue testing is not feasible or available
References: NCCN recommendations across multiple tumor types (cervical, biliary tract, ovarian, breast, lung, etc.)
Lung cancer / EGFR via ctDNA
Covered when ALL of the following are met
NCCN and CAP/IASLC/AMP guidance; ctDNA not typically recommended outside advanced/metastatic settings
Specific variant testing via ctDNA (BRAF, KRAS, PIK3CA)
Covered when tumor is advanced/metastatic or recurrent and tissue testing is infeasible
References: NCCN guidance per tumor type
CTC biomarker testing (AR-V7 and other CTC assays)
Covered when ALL LCD criteria are met
CMS MolDX LCD criteria
Bladder FISH testing
Covered with utilization limits and assay validation
CMS LCD guidance
ALK and HER2 testing
Covered when tumor type and clinical context per NCCN
NCCN guidance
NCCN guidance across esophageal, gastric, breast, cervical, uterine, pancreatic, ovarian, vaginal, bladder, small bowel
NTRK fusion testing
Covered when tumor is advanced/metastatic, recurrent, or when NTRK-positive would inform targeted therapy
NCCN and FDA references support indications.
Covered molecular fusion testing
Covered when aligned with NCCN/FDA recommendations for the tumor type and disease stage
Sources: NCCN sections and FDA label citations.
Sources: NCCN citations and revision notes.
Source: NCCN citations.
Revised and New Criteria Sections (excerpt)
Revisions and additions to coverage criteria for several solid tumor molecular tests were made; specific criteria logic not fully contained in this excerpt.
Full detailed criteria logic appears elsewhere in the policy.
Details not present in this excerpt.
Signals separation of lineages for coverage rules.
Simplifies diagnosis specification.
Expands and shifts indications.
Considered investigational/non-supported.
Inclusion of CPT, PLA, GSP, or other test codes in this policy is for informational purposes only and does not by itself establish coverage. Providers must verify coverage and prior-authorization requirements with the member's benefit plan before ordering or billing tests described in this policy; reference to a code in the policy is not a guarantee of payment.
Broad RNA fusion panels that include ≥51 genes and rely on RNA analysis alone are not supported by current evidence for solid tumors. These panels are considered investigational for indications outside of narrowly specified, guideline-supported scenarios and claims for such tests risk denial.
The policy limits coverage to the indications explicitly listed. For example, TMB testing is restricted to patients with progressed, advanced disease who have no remaining satisfactory options and excludes central nervous system cancers. Similarly, tissue-based MRD assays lacking demonstrated clinical validity are not supported, and several ctDNA or variant analyses are covered only for the specific tumor types and clinical contexts enumerated in this policy. Tests lacking independent technology assessments or guideline support do not meet the coverage threshold.
Certain high-complexity assays are classified as not supported (investigational) for all indications in this policy excerpt. These include cancer exome and genome sequencing and circulating tumor cell (CTC) enumeration. Such tests may be denied when submitted because existing evidence and guideline recommendations do not support their routine use across tumor types.
Coding — CPT/PLA/GSP and Related Codes
| 81445 | Unlisted multigene molecular pathology procedure |
| 81455 | Cancer gene panel, solid tumor |
| 81457 | Targeted solid tumor panel |
| 81458 | Targeted solid tumor panel, larger |
| 81459 | Unlisted molecular pathology procedure |
| 0037U | Proprietary oncology panel (FoundationOne CDx example listed) |
| 0048U | Proprietary oncology panel code |
| 0250U | PGDx elio tissue complete - example |
| 0329U | Oncomap ExTra - example |
| 0334U | Guardant360 TissueNext - example |
| C00-D49 | Neoplasm diagnosis code range |
| Z85 | Personal history of malignant neoplasm |
| 81210 | BRAF variant analysis (document references BRAF ctDNA coding) |
| 81275 | KRAS variant analysis (document references KRAS ctDNA coding) |
| 81276 | KRAS variant analysis (document references KRAS ctDNA coding) |
| 81309 | PIK3CA variant analysis (document references PIK3CA ctDNA coding) |
| 0177U | therascreen PIK3CA RGQ PCR Kit - 0177U referenced |
| 81191 | NTRK NGS Fusion Panel codes (81191-81194 referenced) |
| 81192 | NTRK NGS Fusion Panel |
| 81193 | NTRK NGS Fusion Panel |
| 81194 | NTRK NGS Fusion Panel |
| 81415 | Cancer exome/genome sequencing - somatic (listed under exome/genome sequencing) |
| 81416 | Cancer exome/genome sequencing - somatic |
| 81425 | Cancer exome/genome sequencing - somatic |
| 81426 | Cancer exome/genome sequencing - somatic |
| 0297U | Somatic whole genome sequencing - 0297U referenced |
| 0036U | Referenced with exome/genome sequencing |
| No codes listed |
| affected codes | Placeholder list referenced in the billing and coding article for MRD and ctDNA tests |
| UroVysion | FDA-approved FISH assay for bladder cancer detecting aneuploidy for chromosomes 3, 7, 17 and loss of 9p21 |
Provider Actions — Prior Authorization, Documentation & Billing Guidance
Verify prior authorization for listed panel and MRD codes
Certain broad molecular profiling panels, ctDNA panels, and MRD assays are listed with CPT and proprietary PLA/GSP codes in the policy; providers must verify prior authorization requirements with the member's plan before ordering these tests.
Confirm indication and use correct panel codes
Order tumor-type agnostic and lung-focused molecular profiling panels only for the diagnoses and clinical contexts specified in the policy and use the appropriate panel coding (PLA/GSP or applicable CPT) when submitting for authorization or claims.
- Tumor‑type agnostic panels covered only when member meets listed diagnoses and is seeking further cancer treatment (see policy).
- If a panel is performed, appropriate panel codes (PLA/GSP or CPT) should be used.
Confirm ctDNA panel indication before prior authorization
When ordering broad or lung‑focused ctDNA panel tests, confirm the patient meets the tumor‑type indications listed in the policy and, if ordering ctDNA concurrently with tissue testing, ensure the diagnosis is one of the allowed lung cancer types.
- Broad ctDNA panels limited to specified tumor list (e.g., metastatic lung, colorectal, pancreatic, prostate, etc.).
- If ctDNA performed simultaneously with tissue testing, concurrent use limited to specified lung diagnoses.
Obtain authorization when bladder FISH exceeds frequency limits
Bladder tumor FISH testing is subject to utilization frequency limits after diagnosis; obtain prior authorization or verify plan limits when tests exceed the stated yearly maxima.
- Frequency limits: Years 1–2 up to 4 tests/year; Year 3 up to 3; Year 4 up to 2; Years 5–15 up to 1/year.
- Use of validated assays required (UroVysion noted as FDA‑approved).
Document advanced/metastatic intent for broad NGS panels
For broad NGS panel testing in advanced/metastatic disease (for example NSCLC or colorectal cancer), document that testing is intended to guide systemic therapy or is for advanced/metastatic disease; payer may require prior authorization for broad NGS panels.
- Document disease stage (advanced/metastatic) and that results will inform systemic therapy.
- Prior authorization may be required by the Health Plan for broad NGS panels.
Apply MRD frequency limits and confirm authorization when outside guideline regimens
When MRD testing is ordered outside well‑established guideline regimens, adhere to default frequency limits and secure prior authorization as required by the plan to ensure the test frequency and indication align with policy.
- Default MRD frequency: typically once per patient per cancer diagnosis; for patients without known cancer, once every 12 months absent guideline regimen.
- Prior authorization may be required to enforce frequency limits and intended‑use alignment.
Require validated assay and document timing for bladder FISH
Ensure bladder FISH testing uses validated assays and that frequency limits by years since diagnosis are documented when requesting authorization; the policy references UroVysion as the FDA‑approved assay for the indicated chromosomal targets.
- Validate assay: UroVysion cited as FDA‑approved for bladder FISH.
- Document timing relative to diagnosis to demonstrate compliance with yearly maxima.
Align prior authorization with expanded NTRK indications
Update prior authorization practices to reflect expanded NTRK coverage: NTRK testing criteria now include all metastatic/progressive/advanced/inoperable or unknown solid tumors and added tumor types (e.g., recurrent/metastatic vaginal cancer); verify authorization aligns with these expanded indications.
- Policy revision added all metastatic/progressive/advanced/inoperable or unknown solid tumors to NTRK testing criteria.
- NCCN and FDA references cited support expanded coverage; ensure authorization reflects updated criteria.
Follow plan documents for prior authorization procedures
Prior authorization processes and specific codes are determined by the member's coverage documents and Health Plan administrative policies; verify plan‑level prior authorization requirements and procedures before ordering.
- Clinical policy is a medical necessity guide but does not guarantee payment; follow plan terms and state/federal requirements.
- Contact the Health Plan for exact prior authorization codes/processes.
Limit repeat testing to policy‑specified progression scenarios
Repeat broad or panel testing is limited to specified progression scenarios; order repeat testing only when the policy's progression criteria are met (e.g., progression on targeted therapy for NSCLC) and document the clinical rationale.
- Policy allows repeat tumor‑type agnostic panel testing for progression of advanced/metastatic NSCLC, gastric adenocarcinoma, or metastatic prostate cancer.
- Repeat lung‑focused panels allowed when progression on targeted therapy for NSCLC.
Sequence KIT testing after required prior endocrine therapies
Order KIT variant testing for ER‑positive, HER2‑negative breast cancer only in patients with disease progression after one or two prior lines of endocrine therapy including a CDK4/6 inhibitor; document prior therapies in the medical record.
- KIT testing eligibility requires documented prior endocrine therapy including at least one CDK4/6 inhibitor.
- Document menopausal/sex status criteria where applicable.
Order PIK3CA ctDNA testing only when therapy decisions depend on results
PIK3CA ctDNA testing must be ordered only when the patient has recurrent unresectable or stage IV HR+/HER2‑ breast cancer, is considering alpelisib+fulvestrant or capivasertib+fulvestrant, and has progressed on at least one prior line of therapy; document these therapy considerations.
- PIK3CA ctDNA coverage linked to consideration of specified therapies after progression on prior therapy.
- Document that patient is a candidate for alpelisib or capivasertib plus fulvestrant and prior therapy history.
Consider stepwise (single‑gene then panel) testing when clinically appropriate
If single‑gene testing will adequately inform treatment decisions (for example BRAF testing in certain melanoma stages), perform stepwise testing before broader panels and document rationale for not ordering a broader panel.
- NCCN accepts single‑gene or small panels for some indications; document that single‑gene testing is sufficient for clinical decision.
- Broader profiling may be considered if single‑gene testing is negative and further information is needed.
Adhere to step limits for NGS‑based MRD and authorize exceptions
NGS‑based MRD services (eg, Signatera) are generally allowed once per patient per cancer diagnosis unless there is clinical evidence of an a priori change in tumor genetic content; obtain prior authorization if additional testing frequency is requested.
- Default allowance: once per cancer diagnosis; exceptions require documented clinical evidence of changed genetic content.
- Prior authorization may be required for repeat NGS‑based MRD testing.
Document LCD criteria before ordering AR‑V7 CTC testing
AR‑V7 CTC testing is covered only when CMS LCD criteria are met; document tissue infeasibility and that the test meets LCD conditions (single test per diagnosis or on newly metastatic disease or at progression) before ordering.
- Document that tissue‑based testing is not feasible and include one of the LCD justifications (newly metastatic untested lesion, progression, concern for resistance).
- Only one AR‑V7 test per encounter unless second reasonable adjunct documented; duplicate testing by different methodologies is not covered.
Document therapy intent for fusion testing that could enable targeted agents
Positive fusion (e.g., NTRK) results may enable biomarker‑directed therapies such as larotrectinib, entrectinib, or repotrectinib; document tumor type/stage and how results will inform therapy when requesting authorization.
- NCCN lists these agents for NTRK fusion‑positive tumors; FDA labeling (repotrectinib) notes similar indications.
- Document that detection would inform use of listed targeted therapies.
Do not require prior EGFR TKI therapy for EGFR ctDNA testing under revised policy
The policy removed a prior requirement that EGFR ctDNA testing be contingent on prior EGFR tyrosine kinase inhibitor therapy; do not require EGFR TKI exposure as a prerequisite when ordering EGFR ctDNA under the revised criteria.
- Previously required EGFR TKI consideration criterion has been removed from EGFR ctDNA criteria per policy revision.
Notify and document patient counseling for potential incidental germline findings
Inform and document that somatic molecular profiling may reveal incidental germline variants; document that counseling or disclosure occurred prior to testing.
- Providers should communicate potential for incidental germline findings before somatic testing and record that counseling/disclosure occurred in the medical record.
Use appropriate panel CPT/PLA/GSP codes and bill adjunct analyses separately
When billing for panel tests, use the appropriate panel CPT, PLA, or GSP codes as indicated by the performing laboratory; additional IHC or cytogenetics analyses may be billed alongside PLA/GSP codes when applicable.
- Policy note: additional IHC and/or cytogenetics analyses may be billed alongside PLA or GSP panel codes.
- Reference the policy coding table and Concert Platform for registered tests and current coding guidance prior to claims submission.
Document indication, assay, and management impact for MRD cfDNA testing
For MRD (cfDNA) testing, document the patient's cancer history, that the cancer type/stage is within the MRD assay's intended use, and that identification of recurrence/progression would change management; specify the MRD assay used and prior MRD testing timing.
- Document cancer diagnosis, stage, and that detection would lead to a definitive management change.
- Record which MRD assay is used (eg, Guardant360 Response/Reveal, Signatera) and timing of any prior MRD tests.
Support ctDNA orders with diagnosis‑specific clinical documentation
Clinical documentation for ctDNA testing must support the specific diagnosis and context required by the policy (for example metastatic colorectal cancer for BRAF/KRAS testing or HR+/HER2‑ recurrent/stage IV breast cancer with prior progression for PIK3CA); include prior testing results and treatment history.
- Document tumor type (e.g., metastatic colorectal cancer) and prior testing/treatment history that justify ctDNA testing.
- Include rationale that tissue testing is infeasible when ctDNA is used as an alternative.
Provide AR‑V7 specific documentation per CMS LCD
For AR‑V7 CTC analysis, document that tissue‑based testing is not feasible and whether the test is being performed as the single test during the current cancer diagnosis, for newly metastatic disease, or at progression as required by the CMS LCD.
- Include explicit documentation of tissue infeasibility or one of the LCD‑listed clinical justifications.
- Ensure only one AR‑V7 test per encounter unless an adjunct test meeting LCD criteria is documented.
Document tumor type and stage for fusion testing to support coverage
When ordering NTRK, RET, or ROS1 fusion testing, document tumor type and disease stage (eg, metastatic/unresectable) and that a positive result would inform targeted therapy selection consistent with NCCN/FDA guidance.
- Document tumor type/stage and that detection would enable use of targeted agents (e.g., larotrectinib, entrectinib, repotrectinib).
- Note preference for RNA‑based NGS for fusion detection per NCCN when relevant.
Verify coverage against plan and state rules before ordering
Follow the member's coverage documents and Health Plan administrative policies; this clinical policy guides medical necessity but does not guarantee payment—verify plan and state rules before ordering tests.
- Coverage decisions are subject to the member's evidence of coverage, state Medicaid rules, and plan‑level administrative policies.
- Contact the Health Plan for authorization and coverage clarifications.
Covered Indications — When Testing Is Medically Necessary
Eligibility Requirements
Eligibility for testing is determined by the clinical criteria in each section of the policy and by the member's benefit plan. Providers must document tumor type, stage/setting, prior testing, and clinical rationale in the medical record to support medical necessity and any required prior authorization.
Targeted RNA fusion panels (5–50 genes) are covered only for the specified tumor types or clinical circumstances (for example, glioma, histiocytosis, sarcoma, GIST negative for KIT/PDGFRA, or NSCLC when DNA-based NGS is negative). In contrast, broad RNA fusion panels (≥51 genes) using RNA-only analysis are not supported and are not appropriate for routine use outside of clearly documented, guideline-backed indications.
Where coverage references professional society guidance, eligibility is aligned to the cited guideline language. Tests that are recommended by NCCN or ASCO for specific tumor settings (for example, guideline-listed indications for broad NGS in advanced NSCLC or somatic BRCA1/2 in ovarian cancer) are eligible when the member's tumor type and clinical context match the guideline-based indications and required documentation is provided.
Certain tumor-specific tests have sequencing requirements before coverage. For example, KIT variant analysis coverage in the ER-positive, HER2-negative breast cancer population requires documentation of prior endocrine therapy including a CDK4/6 inhibitor and disease progression per the policy criteria.
Eligibility for ALK, RET, ROS1 and HER2 testing is limited to the tumor types and clinical situations listed in the policy and often follows NCCN recommendations. Document tumor type and stage (e.g., metastatic or unresectable) and prior testing where required to support coverage for ALK and HER2 assays.
Broad NGS panels are covered when used in advanced or metastatic disease to guide systemic therapy per guideline recommendations. When tissue testing is infeasible, ctDNA-based broad molecular profiling may be considered; documentation that tissue is unavailable or infeasible must be provided and complementary tissue testing is preferred when possible.
MRD via cfDNA is covered only for evidence-based assays and indications listed in the policy (examples include Signatera and Guardant Reveal) and when identification of recurrence or progression would change management. Tissue-based MRD testing is not supported when clinical validity is insufficient and tests lacking analytic/clinical validity or guideline support do not meet coverage thresholds.
AR-V7 and other CTC biomarker assays are covered only when the CMS MolDx LCD criteria are met (specific cancer type with an associated biomarker, documented justification such as tissue testing infeasible or progression, and limitations on duplicate testing). Duplicate biomarker testing from the same sample for the same indication using different methodologies is not covered.
NTRK and RET fusion testing eligibility follows the tumor-specific lists in the policy and NCCN guidance: testing is appropriate when detection would inform use of NTRK- or RET-directed therapies in advanced, metastatic, unresectable, or selected tumor types (including certain pediatric CNS tumors, salivary gland, and recurrent vaginal cancer). Document tumor type, stage, and that a positive result would change management.
Several criteria were revised in the policy update. Notably, EGFR, BRAF, and KRAS ctDNA criteria had prior requirements removed (e.g., the EGFR TKI prerequisite was removed); Signatera MRD indications were expanded (ovarian cancer added and a breast cancer indication adjusted); IDH2 criteria were separated by disease lineage; and a new Broad RNA Fusion Panels section was added. Providers should follow the revised criteria text and supporting documentation requirements when determining eligibility.
Not Covered / Investigational
The policy reiterates that inclusion of tests or codes in the document does not automatically imply coverage. Where the policy does not list explicit test-level exclusions, coverage still depends on meeting the stated clinical criteria and benefit-plan rules; always verify specific test coverage with the member's plan.
Broad RNA fusion panels comprising 51 or more genes using RNA-only analysis are identified in the policy as not supported for solid tumor indications and are listed among not-covered services in this section.
Not covered items include tissue-based MRD assays when clinical validity is insufficient, and broad or specific ctDNA variant analyses outside the tumor- and context-specific indications listed. The policy states that tests without demonstrated analytic and clinical validity or lacking guideline/technology-assessment support do not meet the threshold for coverage.
Cancer exome and whole genome sequencing and circulating tumor cell (CTC) enumeration are explicitly noted as not supported by current evidence for routine use across indications and are considered investigational in this policy excerpt.
The policy notes that NCCN generally does not recommend routine broad RNA fusion panels for solid tumors unless a specific tumor guideline or clinical scenario supports fusion testing; performing such broad panels without guideline support is not covered.
Tests for MRD or other tumor assays that lack established clinical utility or independent technology-assessment support are listed as not meeting coverage thresholds. Coverage requires demonstration of analytic and clinical validity and guideline-aligned intended use.
Bladder tumor marker testing is not covered for routine hematuria screening. FISH testing (e.g., UroVysion) is covered only when performed using validated assays and within specified utilization limits for surveillance following a bladder cancer diagnosis.
Duplicate CTC biomarker testing—performing the same biomarker assay on the same sample and for the same clinical indication using different methodologies—is not covered per the MolDx LCD criteria (for example, AR-V7 mRNA testing and IHC for the same indication).
The policy references NCCN guidance that does not endorse routine cancer exome or whole-genome sequencing as part of standard evaluation for cancers or tumors; therefore these tests are treated as non-supported in this coverage section.
As clarified in the revisions, cancer exome/genome sequencing and CTC enumeration are not supported by current evidence for all indications and are presented as investigational/non-covered in this excerpt of the policy.
Background & Rationale
Molecular profiling of solid tumors identifies diagnostic, prognostic, and predictive biomarkers that can guide treatment selection. Test types referenced in this policy include tumor mutational burden (TMB), targeted RNA fusion testing, ctDNA (liquid biopsy) panels, and minimal residual disease (MRD) assays. Somatic testing may also reveal incidental germline findings; providers should counsel patients about this possibility prior to testing and document the discussion.
Definitions & Key Terms
Revision History & Policy Changes
Expanded NTRK testing criteria to include all metastatic, progressive, advanced, inoperable, or unknown solid tumors and added recurrent or metastatic vaginal cancer; multiple tumor types added for RET/ROS1 coverage consistent with NCCN; coding and references updated.
Updated NCCN version numbers and added new coverage additions reflected in Background and References; approval notes updated for NTRK and ERBB2 sections.
Documented multiple minor expansions and clarifications across fusion and rearrangement testing (NTRK/RET/ROS1/ERBB2) and updated coding/reference tables per semi-annual review.
Clarified and removed prior EGFR ctDNA therapy prerequisite and removed NRAS/KRAS prior-testing requirements for certain ctDNA variant criteria; added a new Broad RNA Fusion Panels section and split IDH2 criteria by lineage.
NTRK fusion analysis criteria expanded to include all metastatic/progressive/advanced/inoperable or unknown solid tumors and added recurrent or metastatic vaginal cancer; NCCN and FDA references added to support changes.
NCCN guideline version updates applied across fusion testing sections; added several tumor types to align NTRK/RET/ROS1 and ERBB2 coverage with guideline changes.
Coding, reference-table, background and rationale sections updated to reflect guideline-driven expansion of fusion testing indications.
Multiple documented revisions expanded fusion testing coverage (NTRK/RET/ROS1) and clarified preferred RNA-based NGS methods for fusion detection per NCCN.
Revised criteria: removed EGFR ctDNA TKI prerequisite; removed NRAS/KRAS prior-testing requirements for certain ctDNA variant analyses; added Broad RNA Fusion Panels section; split IDH2 criteria into solid-tumor and hematologic sets; clarified CTC enumeration as not supported.
Signatera MRD indications updated to add ovarian cancer and change a metastatic breast cancer indication to neoadjuvant breast cancer; lung ctDNA language changed to 'metastatic' and neuroendocrine histology added.
Policy reference table, rationale, background, and coding tables updated; glioma MGMT criteria condensed to high-grade glioma language.
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