Concert Genetic Testing: Respiratory
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Defines medical necessity criteria and coding guidance for genetic and molecular tests used to diagnose respiratory disorders (e.g., alpha-1 antitrypsin deficiency, cystic fibrosis) for members of Arizona Complete Health and affiliated Centene health plans.
Policy name changed from 'Concert Genetic Testing: Lung Disorders' to 'Concert Genetic Testing: Respiratory' and criteria for CFTR intron 9 polyT/TG and diagnostic CFTR sequencing were incorporated from another Concert policy.
New criteria for donor-derived cell-free DNA for lung transplant rejection and an Emerging Evidence criteria set for certain lung cancer diagnostic algorithmic tests were created.
SERPINA1 and CFTR testing criteria updated to better align with current guidelines and expanded coverage in some areas.
Updated title to Concert Genetic Testing: Respiratory and incorporated CFTR Intron 9 PolyT and TG Analysis and Diagnostic CFTR Sequencing criteria previously located in other Concert Genetic Testing policies.
Evidence-based criteria for donor-derived cell-free DNA for lung transplant rejection were created based on LCD guidelines.
Policy statements previously labeled 'Investigational' were changed to state 'current evidence does not support.'
Coverage Criteria for Respiratory Genetic Testing
SERPINA1: Medically necessary indications
Covered when ANY of the following are met to establish diagnosis of alpha-1 antitrypsin deficiency:
Based on ATS/ERS guidance and policy criteria
Diagnostic CFTR sequencing/deletion-duplication: Medically necessary indications
Covered when ANY of the following criteria are met to establish or confirm cystic fibrosis:
Based on Cystic Fibrosis Foundation guidance and Sosnay et al.; intermediate sweat chloride range (30–59 mmol/L) may prompt extended CFTR analysis
CFTR intron 9 polyT/TG analysis: Medically necessary indications
Covered when ALL of the following are met:
ACMG recommends reflex testing of the polythymidine tract (5T/7T/9T) when R117H is detected; for R117H/5T heterozygotes consider parental testing to determine cis/trans inheritance
Other covered lung disorders
Genetic testing to establish or confirm diagnoses of certain rare lung disorders with known genetic associations may be considered medically necessary when clinical features consistent with the disorder are present.
Disorder-specific clinical features and resources (e.g., GeneReviews, OMIM) should be used to support testing decisions
Main coverage criteria sets
Policy includes new and revised coverage criteria sets
Full criteria details are in the policy sections referenced; see policy for specifics
These tests are considered under an emerging evidence framework pending validation
See CFTR-specific sections for full diagnostic criteria
Current evidence does not support genetic testing (SERPINA1 common variant analysis or sequencing and/or deletion/duplication analysis, diagnostic CFTR sequencing/deletion-duplication, or CFTR intron 9 polyT/TG analysis) for indications other than those specifically listed as medically necessary in this policy. Tests for alpha-1 antitrypsin deficiency, cystic fibrosis, and other rare lung disorders are covered only when the member meets the explicit clinical or laboratory criteria described in the respective sections of this policy.
Language that previously used the term 'Investigational' has been updated: where the document formerly labeled certain uses or tests as 'Investigational,' the policy now states that 'current evidence does not support' those uses. This change reflects a reframing of the evidence stance rather than addition of new medically necessary indications.
Use of SERPINA1 testing, diagnostic CFTR sequencing/deletion-duplication, or CFTR intron 9 polyT/TG analysis for any indications not explicitly enumerated in the relevant coverage sections is considered not supported by current evidence and therefore not consistent with medical necessity under this policy.
Where the policy indicates that 'current evidence does not support' a test (a phrasing that replaced 'Investigational'), those instances are treated as lacking sufficient evidence to meet medical necessity and may be managed accordingly by prior authorization and claims review processes.
Specific Covered Indications
Diagnostic testing for alpha-1 antitrypsin deficiency (SERPINA1) and cystic fibrosis (CFTR), and CFTR intron 9 polyT/TG reflex testing in R117H-positive CFTR cases.
Diagnostic testing is covered for the following:
See SERPINA1, Diagnostic CFTR, and CFTR intron 9 polyT/TG sections for detailed criteria
Genetic testing for rare lung disorders with known genetic associations (familial pulmonary fibrosis, PCD, LAM, PAP) when clinical features are present.
Covered when clinical features consistent with the disorder are present:
Refer to disorder-specific guidance and resources (GeneReviews, OMIM) to define clinical features
CFTR Intron 9 PolyT/TG analysis and diagnostic CFTR sequencing/deletion-duplication for cystic fibrosis-related diagnostic evaluation — criteria incorporated from other Concert policies.
CFTR intron 9 polyT/TG analysis and diagnostic CFTR sequencing/deletion-duplication are included for CF-related diagnostic evaluation per incorporated criteria:
See CFTR diagnostic and intron 9 sections for full medical necessity criteria
Donor-derived cell-free DNA testing to monitor lung transplant rejection — Evidence-based criteria added based on LCD guidelines.
New evidence-based criteria added:
Refer to the policy section containing donor-derived cfDNA criteria for authorization and clinical details
Coding and Test Thresholds
| 81332 | SERPINA1 common variant analysis (example listed) |
| E88.01 | Alpha-1 antitrypsin deficiency diagnosis code (listed as common billing) |
| 81479 | Unlisted molecular pathology code (used for full gene sequencing example) |
| 81223 | CFTR full gene sequencing (example) |
| 81222 | CFTR deletion/duplication analysis (example) |
| 81224 | CFTR intron 9 polyT and TG analysis (example) |
| E84.0-9 | Cystic fibrosis diagnosis codes (listed) |
| P09 | Newborn finding of other conditions (listed) |
| Q55.4 | Congenital absence of vas deferens (listed) |
| R94.8 | Abnormal results of other imaging and other diagnostic tests (listed) |
| Z13 | Encounter for screening for other diseases and disorders (listed) |
| Z31 | Encounter for procreative management (listed) |
| 81400 | Targeted genomic sequence panel, multiple genes (example group) |
| 81401 | Targeted genomic sequence panel (example group) |
| 81402 | Targeted genomic sequence panel (example group) |
| 81403 | Targeted genomic sequence panel (example group) |
| 81404 | Targeted genomic sequence panel (example group) |
| 81405 | Targeted genomic sequence panel (example group) |
| 81406 | Targeted genomic sequence panel (example group) |
| 81407 | Targeted genomic sequence panel (example group) |
| 81408 | Targeted genomic sequence panel (example group) |
| No codes listed |
Provider Actions and Authorization Guidance
Billing / Prior Authorization
Use the CPT codes listed in the policy's coding/reference table when submitting claims and follow Arizona Complete Health prior authorization (PA) processes. Inclusion of codes in the policy is informational and does not guarantee coverage; providers must confirm coverage and PA requirements before billing.
- Use CPT codes listed in the policy coding/reference table for billing.
- Follow Arizona Complete Health prior authorization processes and submission requirements.
- Inclusion or exclusion of codes does not guarantee coverage; verify coverage prior to claim submission.
Documentation Required
Document clinical indications and supporting evidence that meet the policy's medical necessity criteria. Include relevant clinical data such as laboratory values, specific symptoms, pertinent family history, prior testing results, and clinician rationale in the medical record and on PA submissions to support medical necessity determinations.
- Document clinical indications that meet medical necessity criteria (e.g., lab values, symptoms, family history).
- Attach prior test results and clinician rationale to PA requests when applicable.
Updated Coding and Reference Guidance
Follow the updated coding, reference-table, background, and references in this policy when preparing authorizations and claims. Providers should reference the policy's most current coding guidance and the Concert Platform for registered tests; coding updates may affect billing and PA determinations.
- Follow updated coding, reference-table, background, and reference guidance in the policy.
- Consult the Concert Platform for registered tests and any test-specific billing guidance.
Denial Risk and Policy Language Changes
Providers should be aware that rewording of policy language (for example, changing 'Investigational' to 'current evidence does not support') and other coding or criteria changes can affect coverage decisions and may increase the likelihood of denials. Verify PA criteria and documentation requirements before submitting requests.
- Policy language or criteria changes may affect coverage and increase denial risk.
- Verify current PA criteria and documentation requirements prior to submission.
Background and Scope
This policy provides testing criteria for genetic disorders affecting the lungs, including diagnostic testing for alpha-1 antitrypsin deficiency (SERPINA1) and cystic fibrosis (CFTR), as well as guidance for genetic evaluation of certain rare lung disorders. Coverage criteria specify when sequencing, deletion/duplication, or CFTR intron polyT/TG testing are considered medically necessary and incorporate updated terminology and additional criteria moved into the Respiratory policy.
Definitions and Test Descriptions
Eligibility Requirements
Eligibility for covered testing is defined by the medical necessity criteria in each section. Examples include: for SERPINA1 testing, an abnormally low AAT level (<120 mg/dL) or borderline level (90–140 mg/dL), early-onset emphysema (≤45 years), or emphysema without other risk factors; for diagnostic CFTR sequencing, a positive sweat chloride (≥60 mmol/L) or intermediate sweat chloride (30–59 mmol/L) with compatible clinical features, a positive newborn screen, or symptoms in at least two organ systems; and for CFTR intron 9 polyT/TG analysis, a diagnosis of cystic fibrosis combined with presence of an R117H variant.
Supplementary eligibility considerations referenced in the policy include documented clinical findings and laboratory results that support testing (for example, elevated immunoreactive trypsinogen on newborn screening, sweat chloride measurements, or characteristic multisystem features of cystic fibrosis). Family history (such as a sibling with known AAT deficiency or a first-degree relative with CF) is also recognized as supporting evidence within the specified criteria.
Not Covered / Unsupported Uses
Testing for indications not explicitly described in this policy is considered unsupported by current evidence and is not covered. Providers must follow the policy’s specified clinical and laboratory criteria for SERPINA1, CFTR, and other listed lung disorder testing; orders outside those indications may be denied as not meeting medical necessity.
Tests or test uses that the policy now characterizes as 'current evidence does not support' (terms updated from 'Investigational') lack sufficient evidence for routine coverage and may be subject to denial or additional review under prior authorization procedures.
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