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    OpenPayerBilling CodesOther Pathology and Laboratory ProceduresCPT cpt-89160-fecal-muscle-fiber-microscopy
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    CPT 89160: Fecal Microscopic Examination for Muscle Fibers

    CPT code 89160 describes a microscopic fecal examination performed by an analyst to detect muscle fibers after meat consumption, a laboratory diagnostic service used to evaluate stool for undigested muscle tissue; typical service type is laboratory analysis and the typical site of service is a clinical laboratory or hospital laboratory.

    For related coverage guidance, see recent payer policy updates: Oral Cancer Screening and Testing, RTM Testing for Alpha-1 Antitrypsin Deficiency, Cytochrome P450 Genotype-Guided Treatment Strategy Corporate Medical Policy.

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    Table of contents

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    Clinical & Coding Specifications

    Clinical Context

    A patient presents to an outpatient clinical laboratory or hospital laboratory with a request for fecal analysis to document the presence of undigested muscle fibers after recent meat consumption. Typical patients are adults or children whose clinicians need objective evidence of recent meat ingestion for forensic, medico-legal, dietary compliance, or nutritional assessment reasons. The clinical workflow begins with specimen collection: a fresh stool sample is obtained in a clean container and labeled with patient identifiers and collection time. The specimen is delivered to the laboratory, where a trained laboratory analyst prepares a wet mount or stained slide and performs a microscopic examination specifically to identify coarse or intact muscle fibers consistent with recent meat ingestion. Findings are documented in the laboratory report and communicated to the ordering clinician. If additional testing is required (for example, infectious stool studies or toxicology), the specimen may be forwarded or separate samples collected. Typical sites of service include hospital clinical laboratories, independent diagnostic laboratories, and forensic pathology laboratories.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    81002Urinalysis, non-automated, without microscopyCommon adjunct laboratory test during clinical evaluations where multiple specimens are collected
    81003Urinalysis, non-automated, with microscopyMay be ordered alongside stool microscopy when broader GI or metabolic evaluation is underway
    87086Culture, bacterial; stool, with isolation and presumptive identification of enteric pathogensPerformed when infectious causes are suspected in addition to dietary analysis
    82270Blood, occult, by immunoassay, qualitativeFecal occult blood testing often accompanies stool examinations in GI evaluations
    89260Evaluation of stool for gastrointestinal parasites (microscopic)Performed when parasitic infection is a differential alongside identification of undigested food fibers

    Related Modifiers

    7 rows

    ModifierDescriptionWhen to Use
    26Modifier 26 (Professional Component) identifies and bills only the professional portion of a split service — the physician’s interpretation, report, and medical judgment — when the technical…- Use CPT Modifier -26 when you are billing only the professional component (PC) of a split‑bill eligible service—i.e., you performed the physician interpretation, medical judgment and prepared a…
    90Modifier ‑90 (Reference/Outside Laboratory) indicates that a laboratory test was performed by an entity other than the treating or reporting provider. The American Medical Association defines…- Use CPT modifier -90 when a laboratory test is performed by an outside/reference laboratory (an entity other than the treating or reporting physician or qualified professional) and the claim needs…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    78CPT modifier -78 indicates an unplanned, related return to the operating or procedure room by the same provider during the global postoperative period. It is appended when treatment for a…- Use modifier -78 when an unplanned, related complication during the original procedure’s global postoperative period requires the patient to return to a formal operating or procedure room and the…
    80CPT® Modifier 80 (Assistant Surgeon) is appended to a surgical CPT code when a physician (MD or DO) provides full, continuous assistance throughout the operative procedure. It is intended only for…- Use CPT Modifier -80 when a physician (MD or DO) serves as an assistant surgeon and provides full, continuous assistance throughout the entire operative procedure; append -80 to the surgical CPT…
    82Modifier 82 is appended to a surgical CPT code to indicate that an attending physician acted as an assistant because a qualified resident surgeon was unavailable. In teaching hospitals it documents…- When to use: Append modifier 82 in teaching-hospital settings to indicate a physician served as an assistant surgeon because a qualified resident surgeon was unavailable (includes situations where…

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    207Q00000X
    163W00000X
    1744R1102X
    207RH0005X
    208600000X
    2080C0008X
    292200000X
    2472V0600X

    Related ICD-10-CM Codes

    24 rows

    ICD-10-CM CodeDescription
    A08.4Viral intestinal infection, unspecified
    A09Infectious gastroenteritis and colitis, unspecified
    B96.81Helicobacter pylori [H. pylori] as the cause of diseases classified elsewhere
    K21.9Gastro-esophageal reflux disease without esophagitis
    K35.80Unspecified acute appendicitis
    K52.1Toxic gastroenteritis and colitis
    K52.9Noninfective gastroenteritis and colitis, unspecified
    K57.20Diverticulitis of large intestine with perforation and abscess without bleeding
    K57.30Diverticulosis of large intestine without perforation or abscess without bleeding
    K58.0Irritable bowel syndrome with diarrhea

    Showing 1–10 of 24

    Related Payer Policy Updates

    Specialty: Genetic & Molecular Testing1 / 3

    10 rows

    PolicyPayerEffective Date
    Oral Cancer Screening and TestingOscar Health2027-01-01
    RTM Testing for Alpha-1 Antitrypsin DeficiencyOscar Health2027-01-01
    Cytochrome P450 Genotype-Guided Treatment Strategy Corporate Medical Policybcbsvermont2027-01-01
    Carrier Testing Panels for Genetic Diseases (for Kentucky Only)UnitedHealthcare2026-10-01
    Genetic Testing for Neurological Disorders (for Kansas Only)UnitedHealthcare2026-10-01
    Genetic and Molecular TestingProvidence Health Plan2026-10-01
    Cell-Free Fetal DNA Testing (for Idaho Only)UnitedHealthcare2026-10-01
    Next Generation Sequencing for Minimal Residual Disease DetectionProvidence Health Plan2026-10-01
    Pharmacogenetic Panel Testing (for Kansas Only)UnitedHealthcare2026-10-01
    Non-Covered Genetic Panel TestsProvidence Health Plan2026-10-01

    Related Codes

    CPT-89049-CAFFEINE-HALOTHANE-CONTRACTURE-TEST-MH-SUSCEPTIBILITY

    CPT 89049: Caffeine-Halothane Contracture Test for Malignant Hyperthermia Susceptibility

    CPT-89050-CSF-JOINT-FLUID-CELL-COUNT

    CPT 89050: Cell Count of Miscellaneous Body Fluids (CSF, Joint Fluid)

    CPT-89051-BODY-FLUID-CELL-COUNT-DIFFERENTIAL-NON-BLOOD

    CPT 89051: Body Fluid Cell Count with Differential

    CPT-89055-STOOL-LEUKOCYTE-ANALYSIS

    CPT 89055: Stool Leukocyte Test, Technical Component

    CPT-89060-MICROSCOPIC-CRYSTAL-ANALYSIS-TISSUE-BODY-FLUID

    CPT 89060: Crystal Analysis by Light Microscopy

    CPT-89125-FAT-STAIN-STOOL-URINE-RESPIRATORY-SPECIMEN

    CPT 89125: Fat Stain of Feces, Urine, or Respiratory Secretions

    CPT-89190-NASAL-SMEAR-EOSINOPHIL-ANALYSIS

    CPT 89190: Nasal Smear Examination for Eosinophils

    CPT-89220-ASSISTED-SPUTUM-INDUCTION-AEROSOL-MIST

    CPT 89220: Induced Sputum Collection by Aerosol Mist

    CPT-89230-SWEAT-COLLECTION-BY-IONTOPHORESIS

    CPT 89230: Sweat Collection by Iontophoresis

    CPT-89240-UNLISTED-PATHOLOGY-PROCEDURE

    CPT 89240: Unlisted Pathology Procedure

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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