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    OpenPayerBilling CodesRepair Procedures on the AnusCPT cpt-46740-repair-high-imperforate-anus-rectovaginal-rectourethral-fistula
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    CPT 46740: Repair of High Imperforate Anus with Fistula

    Medicare pays $2092 on average nationally for this procedure.

    CPT code 46740 describes surgical repair of a high imperforate anus with an associated rectourethral or rectovaginal fistula, performed via a perineal or sacroperineal approach; this is a reconstructive anorectal procedure typically performed in an operating room under anesthesia and represents definitive correction of the anorectal malformation.

    For related coverage guidance, see recent payer policy updates: Surgical Procedures, Outpatient Surgical Procedures - Site of Service, Site of Service Ambulatory Service Center (ASC) Select — Surgical or Diagnostic Procedures in Adults.

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    Table of contents

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    Clinical & Coding Specifications

    Clinical Context

    A full-term male neonate is born with an imperforate anus identified on newborn exam. The infant has abdominal distention and inability to pass meconium. Imaging (invertogram/contrast studies) and pelvic MRI identify a high-type imperforate anus with a rectourethral fistula. Initial management includes a diverting colostomy performed in the neonatal period. At 3–6 months of age, following growth and evaluation, the pediatric colorectal surgery team plans a definitive pull-through repair via a posterior sagittal or sacroperineal approach to reconstruct the anorectal canal and close the rectourethral fistula. The typical clinical workflow includes preoperative evaluation (anesthesia assessment, baseline labs), intraoperative repair using CPT 46740 for high imperforate anus with rectourethral or rectovaginal fistula, intraoperative urinary catheterization to protect the urinary tract, possible concurrent urologic assistance for fistula repair, postoperative monitoring in a pediatric recovery unit, pain and wound management, and staged colostomy takedown several months later if applicable.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    56620Repair of vaginal fistula (rectovaginal) — simple closuresMay be performed when a rectovaginal fistula is present or for concomitant vaginal repair in females.
    51550Cystourethroscopy, with/without irrigation, diagnosticUsed preoperatively or intraoperatively by urology to locate and assess a rectourethral fistula.
    44620Colostomy or enterostomy, exteriorization of intestine; newborn, early infancyOften performed as an initial diverting procedure prior to definitive CPT 46740 repair.
    44625Colostomy closure (takdown)Performed months after definitive anorectal reconstruction to restore intestinal continuity.
    45380Colonoscopy, flexible; diagnostic, including collection of specimen(s) by brushing or washing, when performedMay be used in older children for preoperative evaluation of distal bowel anatomy if indicated.
    A4649Surgical supply, miscellaneous (unlisted)Occasional use for special prosthetics or supplies specific to complex reconstructions (billed per payer rules).

    Related Modifiers

    14 rows

    ModifierDescriptionWhen to Use
    51Modifier –51 (Multiple Procedures) is used when the same provider performs multiple procedures in the same session to identify secondary, non‑exempt procedures and indicate payment reduction logic…- Use modifier -51 when the same provider performs multiple distinct procedures during the same patient encounter: report the highest‑valued procedure first (no modifier) and append -51 to…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    62Modifier 62 indicates that two surgeons function as co‑surgeons, each performing distinct parts of the same primary surgical procedure. It is appended to the primary procedure code (and any…- Use modifier -62 when two surgeons act as co‑surgeons (both primary surgeons) on a single definitive primary procedure, each performing distinct parts of the same surgical procedure (append -62 to…
    66Modifier 66 (Surgical Team) is used when three or more surgeons act as primary surgeons on a single, highly complex procedure. The AMA defines it for use when a surgical team — often composed of…- Use modifier 66 when three or more surgeons act as primary surgeons working collaboratively as a surgical team on a single, highly complex or difficult procedure (for example organ…
    78CPT modifier -78 indicates an unplanned, related return to the operating or procedure room by the same provider during the global postoperative period. It is appended when treatment for a…- Use modifier -78 when an unplanned, related complication during the original procedure’s global postoperative period requires the patient to return to a formal operating or procedure room and the…
    80CPT® Modifier 80 (Assistant Surgeon) is appended to a surgical CPT code when a physician (MD or DO) provides full, continuous assistance throughout the operative procedure. It is intended only for…- Use CPT Modifier -80 when a physician (MD or DO) serves as an assistant surgeon and provides full, continuous assistance throughout the entire operative procedure; append -80 to the surgical CPT…
    81Modifier -81 indicates a physician served as a minimal assistant surgeon for part—not all—of an operative procedure. Use when a physician’s assisting role is limited and does not represent full…- Use CPT modifier -81 when a physician acts as a minimum assistant surgeon who assists during only part (a limited portion) of an operative procedure; append -81 to the primary surgical CPT code to…
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    73Modifier 73 indicates a facility-level outpatient hospital or ASC procedure that was discontinued after the patient was prepared and taken to the procedure/operating room but before any anesthesia…- When to use: Apply CPT modifier 73 on the FACILITY (outpatient hospital or ASC) claim when the patient has been fully prepared and physically taken into the procedure/operating room but the…

    Showing 1–10 of 14

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    2080P0208X
    208000000X
    225700000X
    385HR2055X
    282J00000X
    1835X0200X
    332900000X
    2278E0002X

    Related ICD-10-CM Codes

    27 rows

    ICD-10-CM CodeDescription
    K62.5Hemorrhage of anus and rectum
    K62.6Ulcer of anus and rectum
    N82.0Vesicovaginal fistula
    N82.1Other female urinary-genital tract fistulae
    N82.2Fistula of vagina to small intestine
    N82.3Fistula of vagina to large intestine
    N82.8Other female genital tract fistulae
    Q42.3Congenital absence, atresia and stenosis of anus without fistula
    Q42.8Congenital absence, atresia and stenosis of other parts of large intestine
    Q43.1Hirschsprung's disease

    Showing 1–10 of 27

    Related Payer Policy Updates

    Specialty: General Surgery1 / 3

    10 rows

    PolicyPayerEffective Date
    Surgical ProceduresUnitedHealthcare2026-09-01
    Outpatient Surgical Procedures - Site of ServiceUnitedHealthcare2026-09-01
    Site of Service Ambulatory Service Center (ASC) Select — Surgical or Diagnostic Procedures in AdultsPremera Bluecross2026-09-01
    Site of Service Ambulatory Surgical Center (ASC) Select — Surgical or Diagnostic Procedures in AdultsPremera Bluecross2026-09-01
    Site of Service Ambulatory Service Center (ASC) SelectPremera Bluecross2026-09-01
    Site of Service Ambulatory Surgical Center (ASC) Select — Site of Service for Ambulatory Surgical Procedures (ASC Select)Premera Bluecross2026-09-01
    Site of Service Ambulatory Service Center (ASC) SelectPremera Bluecross2026-09-01
    Outpatient Surgical Procedures - Site of Servicesierra health and life2026-08-01
    Medical Necessity Guidelines — Inpatient Surgical CareMass General Brigham Health Plan2026-08-01
    Ambulatory Surgery Center (ASC) - Site of Care PolicyKaiser Permanente2026-08-01

    Related Codes

    CPT-46700-ANOPLASTY-ANAL-STRICTURE-REPAIR

    CPT 46700: Anoplasty for Anal Stricture, Adult

    CPT-46705-ANOPLASTY-INFANT-ANAL-STRICTURE

    CPT 46705: Anoplasty for Infant Anal Stricture

    CPT-46706-ANAL-FISTULA-REPAIR-FIBRIN-GLUE

    CPT 46706: Fibrin Glue Repair of Anal Fistula

    CPT-46707-ANORECTAL-FISTULA-REPAIR-TISSUE-FLAP

    CPT 46707: Anorectal Fistula Repair with Tissue Closure

    CPT-46710-ILEOANAL-POUCH-FISTULA-REPAIR-POUCH-ADVANCEMENT-PERINEAL

    CPT 46710: Ileoanal Pouch Advancement and Fistula/Sinus Repair

    CPT-46712-ILEOANAL-POUCH-FISTULA-REPAIR-POUCH-ADVANCEMENT

    CPT 46712: Ileoanal Pouch Fistula/Sinus Repair with Pouch Advancement

    CPT-46715-REPAIR-LOW-IMPERFORATE-ANUS-ANORECTAL-RECONSTRUCTION

    CPT 46715: Repair of Low Imperforate or Malformed Anus

    CPT-46716-LOW-IMPERFORATE-ANUS-REPAIR-ANORECTAL-MALFORMATION

    CPT 46716: Repair of Low Imperforate or Malformed Anus

    CPT-46730-HIGH-IMPERFORATE-ANUS-REPAIR-PERINEAL-SACROPERINEAL

    CPT 46730: Repair of High Imperforate Anus, No Fistula

    CPT-46735-HIGH-IMPERFORATE-ANUS-REPAIR-TRANSABDOMINAL-SACROPERINEAL

    CPT 46735: Repair of High Imperforate Anus, No Fistula

    Showing 1–10 of 20

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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