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    OpenPayerBilling CodesRepair Procedures on the AnusCPT cpt-46707-anorectal-fistula-repair-tissue-flap
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    CPT 46707: Anorectal Fistula Repair with Tissue Closure

    Medicare pays $523 on average nationally for this procedure.

    CPT code 46707 describes surgical repair of an anorectal fistula using a tissue flap or graft to close the abnormal opening between the anus and rectum; this procedure is a reconstructive anorectal surgery typically performed in an operating room or ambulatory surgical center under anesthesia and is used for fistulae resulting from prior surgery, trauma, infection, or congenital conditions.

    For related coverage guidance, see recent payer policy updates: Surgical Procedures, Outpatient Surgical Procedures - Site of Service, Site of Service Ambulatory Service Center (ASC) Select — Surgical or Diagnostic Procedures in Adults.

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    Table of contents

    Progress1 / 7

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    Clinical & Coding Specifications

    Clinical Context

    A 46-year-old patient presents with persistent drainage and recurrent perianal irritation three months after a complicated hemorrhoidectomy. Examination and MRI fistulography confirm a transsphincteric anorectal fistula with an external opening lateral to the anal verge. The colorectal surgeon schedules a repair using a tissue flap closure to close the tract and preserve sphincter function. The patient is admitted to an ambulatory surgery center and undergoes preoperative evaluation, regional or general anesthesia, intraoperative identification and curettage of the fistula tract, creation or mobilization of a mucosal advancement or V-Y flap (or other tissue flap), flap advancement to close the internal opening, layered closure, and dressing. Postoperative workflow includes recovery room monitoring, discharge instructions for wound care, analgesia, stool softeners, and outpatient follow-up within 1–2 weeks to assess healing and monitor for recurrence or infection.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    46610Fistulectomy, anorectal, complicated (e.g., high or multiple tracts)Performed when excision of the tract is required instead of or in addition to flap closure; may be performed prior to definitive flap repair in complex disease
    46900Repair of anus, simpleMay be used for concomitant simple repairs of perianal tissues or skin defects during the same operative session
    46040Incision and drainage of pilonidal cyst or sinus, simplePerformed when associated pilonidal or perianal abscess is present and requires drainage before or during fistula management
    76937Ultrasound guidance for needle placementUsed when imaging guidance is employed intraoperatively for localization of tracts or seton placement
    49505Repair initial inguinal hernia, age 5 years or older; reducibleData not available in the input.

    Related Modifiers

    11 rows

    ModifierDescriptionWhen to Use
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    23Modifier -23 (Unusual Anesthesia) is used on anesthesia service CPT codes when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia…- Use modifier -23 only on anesthesia CPT codes (00100–01999) when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia because of…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    62Modifier 62 indicates that two surgeons function as co‑surgeons, each performing distinct parts of the same primary surgical procedure. It is appended to the primary procedure code (and any…- Use modifier -62 when two surgeons act as co‑surgeons (both primary surgeons) on a single definitive primary procedure, each performing distinct parts of the same surgical procedure (append -62 to…
    63Modifier‑63 is appended to surgical CPT codes (20000–69990) when a procedure is performed on a neonate or infant weighing ≤ 4 kg (about 8.8 lbs). The AMA/AAPC definition specifies this use and notes…- Use modifier -63 only for surgical procedures in the CPT 20000–69990 series performed on a neonate or infant who weighs ≤ 4 kg at the time of the procedure; it indicates increased complexity due to…
    66Modifier 66 (Surgical Team) is used when three or more surgeons act as primary surgeons on a single, highly complex procedure. The AMA defines it for use when a surgical team — often composed of…- Use modifier 66 when three or more surgeons act as primary surgeons working collaboratively as a surgical team on a single, highly complex or difficult procedure (for example organ…
    78CPT modifier -78 indicates an unplanned, related return to the operating or procedure room by the same provider during the global postoperative period. It is appended when treatment for a…- Use modifier -78 when an unplanned, related complication during the original procedure’s global postoperative period requires the patient to return to a formal operating or procedure room and the…
    80CPT® Modifier 80 (Assistant Surgeon) is appended to a surgical CPT code when a physician (MD or DO) provides full, continuous assistance throughout the operative procedure. It is intended only for…- Use CPT Modifier -80 when a physician (MD or DO) serves as an assistant surgeon and provides full, continuous assistance throughout the entire operative procedure; append -80 to the surgical CPT…
    81Modifier -81 indicates a physician served as a minimal assistant surgeon for part—not all—of an operative procedure. Use when a physician’s assisting role is limited and does not represent full…- Use CPT modifier -81 when a physician acts as a minimum assistant surgeon who assists during only part (a limited portion) of an operative procedure; append -81 to the primary surgical CPT code to…

    Showing 1–10 of 11

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    207RC0000X
    207RH0002X
    208000000X
    103T00000X
    261QL0400X
    2251S0007X
    156FX1100X
    2279G0305X

    Related ICD-10-CM Codes

    25 rows

    ICD-10-CM CodeDescription
    A06.9Amebiasis, unspecified
    A07.2Cryptosporidiosis
    K50.912Crohn's disease, unspecified, with intestinal obstruction
    K51.912Ulcerative colitis, unspecified with intestinal obstruction
    K57.20Diverticulitis of large intestine with perforation and abscess without bleeding
    K57.30Diverticulosis of large intestine without perforation or abscess without bleeding
    K57.32Diverticulitis of large intestine without perforation or abscess without bleeding
    K57.50Diverticulosis of both small and large intestine without perforation or abscess without bleeding
    K57.52Diverticulitis of both small and large intestine without perforation or abscess without bleeding
    K60.0Acute anal fissure

    Showing 1–10 of 25

    Related Payer Policy Updates

    Specialty: General Surgery1 / 3

    10 rows

    PolicyPayerEffective Date
    Surgical ProceduresUnitedHealthcare2026-09-01
    Outpatient Surgical Procedures - Site of ServiceUnitedHealthcare2026-09-01
    Site of Service Ambulatory Service Center (ASC) Select — Surgical or Diagnostic Procedures in AdultsPremera Bluecross2026-09-01
    Site of Service Ambulatory Surgical Center (ASC) Select — Surgical or Diagnostic Procedures in AdultsPremera Bluecross2026-09-01
    Site of Service Ambulatory Service Center (ASC) SelectPremera Bluecross2026-09-01
    Site of Service Ambulatory Surgical Center (ASC) Select — Site of Service for Ambulatory Surgical Procedures (ASC Select)Premera Bluecross2026-09-01
    Site of Service Ambulatory Service Center (ASC) SelectPremera Bluecross2026-09-01
    Outpatient Surgical Procedures - Site of Servicesierra health and life2026-08-01
    Medical Necessity Guidelines — Inpatient Surgical CareMass General Brigham Health Plan2026-08-01
    Ambulatory Surgery Center (ASC) - Site of Care PolicyKaiser Permanente2026-08-01

    Related Codes

    CPT-46700-ANOPLASTY-ANAL-STRICTURE-REPAIR

    CPT 46700: Anoplasty for Anal Stricture, Adult

    CPT-46705-ANOPLASTY-INFANT-ANAL-STRICTURE

    CPT 46705: Anoplasty for Infant Anal Stricture

    CPT-46706-ANAL-FISTULA-REPAIR-FIBRIN-GLUE

    CPT 46706: Fibrin Glue Repair of Anal Fistula

    CPT-46710-ILEOANAL-POUCH-FISTULA-REPAIR-POUCH-ADVANCEMENT-PERINEAL

    CPT 46710: Ileoanal Pouch Advancement and Fistula/Sinus Repair

    CPT-46712-ILEOANAL-POUCH-FISTULA-REPAIR-POUCH-ADVANCEMENT

    CPT 46712: Ileoanal Pouch Fistula/Sinus Repair with Pouch Advancement

    CPT-46715-REPAIR-LOW-IMPERFORATE-ANUS-ANORECTAL-RECONSTRUCTION

    CPT 46715: Repair of Low Imperforate or Malformed Anus

    CPT-46716-LOW-IMPERFORATE-ANUS-REPAIR-ANORECTAL-MALFORMATION

    CPT 46716: Repair of Low Imperforate or Malformed Anus

    CPT-46730-HIGH-IMPERFORATE-ANUS-REPAIR-PERINEAL-SACROPERINEAL

    CPT 46730: Repair of High Imperforate Anus, No Fistula

    CPT-46735-HIGH-IMPERFORATE-ANUS-REPAIR-TRANSABDOMINAL-SACROPERINEAL

    CPT 46735: Repair of High Imperforate Anus, No Fistula

    CPT-46740-REPAIR-HIGH-IMPERFORATE-ANUS-RECTOVAGINAL-RECTOURETHRAL-FISTULA

    CPT 46740: Repair of High Imperforate Anus with Fistula

    Showing 1–10 of 20

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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