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    OpenPayerBilling CodesRepair Procedures on the AnusCPT cpt-46716-low-imperforate-anus-repair-anorectal-malformation
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    CPT 46716: Repair of Low Imperforate or Malformed Anus

    Medicare pays $1232 on average nationally for this procedure.

    CPT code 46716 describes surgical repair of a low imperforate or malformed anus, including closure of an anoperineal or anovestibular fistula, creation of a new anal opening, and repositioning of the rectal pouch into the anal opening; service type: surgical anorectal reconstruction for congenital anorectal malformations; typical site of service: operating room in an inpatient or outpatient surgical facility under general anesthesia.

    For related coverage guidance, see recent payer policy updates: Surgical Procedures, Outpatient Surgical Procedures - Site of Service, Site of Service Ambulatory Service Center (ASC) Select — Surgical or Diagnostic Procedures in Adults.

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    Table of contents

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    Clinical & Coding Specifications

    Clinical Context

    A realistic patient scenario involves a neonate or infant born with an imperforate anus or a low malformation of the anorectal region presenting with an anoperineal or anovestibular fistula and inability to pass stool normally. The surgical team—typically pediatric surgery with neonatal anesthesiology support—evaluates the infant with a focused physical exam and abdominal/ pelvic imaging as needed to confirm the location of the rectal pouch and the presence of a fistula. Preoperative preparation includes bowel management if previously diverted, routine neonatal labs, and anesthesia assessment. In the operating room, the surgeon performs a perineal repair: closure of the fistula, creation of a patent anal opening, and mobilization/repositioning of the rectal pouch into the neorectum with layered soft-tissue reconstruction. Postoperative care occurs in a pediatric recovery or neonatal intensive care setting with monitoring for wound integrity, stool passage, infection, and urinary function. Follow-up includes wound checks, stooling assessment, potential dilations, and long-term anorectal function monitoring by pediatric surgery and colorectal specialty clinics.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    00840Neonatal abdominal surgery; small intestine, large intestine procedures (anesthesia code)Anesthesia coding commonly billed for neonatal abdominal/perineal procedures including imperforate anus repair (used on anesthesia claims)
    49440Closure of enterostomy, open; simpleMay be performed before or after definitive anorectal repair if a diverting colostomy closure is indicated
    44310Colostomy or enterostomy, creation or revision (abdominal approach)Creation of a diverting colostomy may be performed prior to definitive repair in staged management of high malformations
    57425Repair of cloacal malformation; perineal approachUsed for related complex perineal and cloacal reconstructions when genitourinary components are present
    56170Excision of peri-anal or perineal fistula (complex)May be performed in conjunction with definitive anorectal reconstruction to address associated fistulous tracts

    Related Modifiers

    12 rows

    ModifierDescriptionWhen to Use
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    23Modifier -23 (Unusual Anesthesia) is used on anesthesia service CPT codes when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia…- Use modifier -23 only on anesthesia CPT codes (00100–01999) when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia because of…
    26Modifier 26 (Professional Component) identifies and bills only the professional portion of a split service — the physician’s interpretation, report, and medical judgment — when the technical…- Use CPT Modifier -26 when you are billing only the professional component (PC) of a split‑bill eligible service—i.e., you performed the physician interpretation, medical judgment and prepared a…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    55Modifier –55 indicates the billing provider furnished only postoperative management for a procedure that has a global surgical period. According to AAPC, this modifier is appended to the same CPT…- Use modifier -55 when billing the same CPT surgical code that has a 10- or 90-day global period and you, as a provider other than the original surgeon, furnished ONLY postoperative management (no…
    62Modifier 62 indicates that two surgeons function as co‑surgeons, each performing distinct parts of the same primary surgical procedure. It is appended to the primary procedure code (and any…- Use modifier -62 when two surgeons act as co‑surgeons (both primary surgeons) on a single definitive primary procedure, each performing distinct parts of the same surgical procedure (append -62 to…
    63Modifier‑63 is appended to surgical CPT codes (20000–69990) when a procedure is performed on a neonate or infant weighing ≤ 4 kg (about 8.8 lbs). The AMA/AAPC definition specifies this use and notes…- Use modifier -63 only for surgical procedures in the CPT 20000–69990 series performed on a neonate or infant who weighs ≤ 4 kg at the time of the procedure; it indicates increased complexity due to…
    66Modifier 66 (Surgical Team) is used when three or more surgeons act as primary surgeons on a single, highly complex procedure. The AMA defines it for use when a surgical team — often composed of…- Use modifier 66 when three or more surgeons act as primary surgeons working collaboratively as a surgical team on a single, highly complex or difficult procedure (for example organ…
    78CPT modifier -78 indicates an unplanned, related return to the operating or procedure room by the same provider during the global postoperative period. It is appended when treatment for a…- Use modifier -78 when an unplanned, related complication during the original procedure’s global postoperative period requires the patient to return to a formal operating or procedure room and the…

    Showing 1–10 of 12

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    207Q00000X
    2080P0207X
    207R00000X
    207L00000X
    208D00000X
    2083B0002X
    172A00000X
    174N00000X

    Related Payer Policy Updates

    Specialty: General Surgery1 / 3

    10 rows

    PolicyPayerEffective Date
    Surgical ProceduresUnitedHealthcare2026-09-01
    Outpatient Surgical Procedures - Site of ServiceUnitedHealthcare2026-09-01
    Site of Service Ambulatory Service Center (ASC) Select — Surgical or Diagnostic Procedures in AdultsPremera Bluecross2026-09-01
    Site of Service Ambulatory Surgical Center (ASC) Select — Surgical or Diagnostic Procedures in AdultsPremera Bluecross2026-09-01
    Site of Service Ambulatory Service Center (ASC) SelectPremera Bluecross2026-09-01
    Site of Service Ambulatory Surgical Center (ASC) Select — Site of Service for Ambulatory Surgical Procedures (ASC Select)Premera Bluecross2026-09-01
    Site of Service Ambulatory Service Center (ASC) SelectPremera Bluecross2026-09-01
    Outpatient Surgical Procedures - Site of Servicesierra health and life2026-08-01
    Medical Necessity Guidelines — Inpatient Surgical CareMass General Brigham Health Plan2026-08-01
    Ambulatory Surgery Center (ASC) - Site of Care PolicyKaiser Permanente2026-08-01

    Related Codes

    CPT-46700-ANOPLASTY-ANAL-STRICTURE-REPAIR

    CPT 46700: Anoplasty for Anal Stricture, Adult

    CPT-46705-ANOPLASTY-INFANT-ANAL-STRICTURE

    CPT 46705: Anoplasty for Infant Anal Stricture

    CPT-46706-ANAL-FISTULA-REPAIR-FIBRIN-GLUE

    CPT 46706: Fibrin Glue Repair of Anal Fistula

    CPT-46707-ANORECTAL-FISTULA-REPAIR-TISSUE-FLAP

    CPT 46707: Anorectal Fistula Repair with Tissue Closure

    CPT-46710-ILEOANAL-POUCH-FISTULA-REPAIR-POUCH-ADVANCEMENT-PERINEAL

    CPT 46710: Ileoanal Pouch Advancement and Fistula/Sinus Repair

    CPT-46712-ILEOANAL-POUCH-FISTULA-REPAIR-POUCH-ADVANCEMENT

    CPT 46712: Ileoanal Pouch Fistula/Sinus Repair with Pouch Advancement

    CPT-46715-REPAIR-LOW-IMPERFORATE-ANUS-ANORECTAL-RECONSTRUCTION

    CPT 46715: Repair of Low Imperforate or Malformed Anus

    CPT-46730-HIGH-IMPERFORATE-ANUS-REPAIR-PERINEAL-SACROPERINEAL

    CPT 46730: Repair of High Imperforate Anus, No Fistula

    CPT-46735-HIGH-IMPERFORATE-ANUS-REPAIR-TRANSABDOMINAL-SACROPERINEAL

    CPT 46735: Repair of High Imperforate Anus, No Fistula

    CPT-46740-REPAIR-HIGH-IMPERFORATE-ANUS-RECTOVAGINAL-RECTOURETHRAL-FISTULA

    CPT 46740: Repair of High Imperforate Anus with Fistula

    Showing 1–10 of 20

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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