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    v1.0.30
    OpenPayerBilling CodesRepair Procedures on the EsophagusCPT cpt-43313-congenital-esophageal-reconstruction-thoracotomy
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    CPT 43313: Repair of Congenital Esophageal Defect via Thoracotomy

    Medicare pays $2725 on average nationally for this procedure.

    CPT code 43313 describes plastic repair or reconstruction of a congenital esophageal defect performed through a chest incision or thoracotomy; this is a surgical esophageal reconstruction procedure typically performed in an inpatient surgical setting such as a pediatric or thoracic operating room and includes correction of congenital structural anomalies of the esophagus but does not include tracheoesophageal fistula repair.

    For related coverage guidance, see recent payer policy updates: Percutaneous Electrical Nerve Field Stimulation for Functional Abdominal Pain Disorders, Esophagogastroduodenoscopy (EGD) Coverage Policy, Radiofrequency Therapy for Fecal Incontinence.

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    Table of contents

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    Clinical & Coding Specifications

    Clinical Context

    A full-term neonate presents in the newborn nursery with feeding intolerance, drooling, and choking with attempted feeds. Chest radiograph after placement of an orogastric tube demonstrates coiling of the tube in the upper chest consistent with esophageal atresia without an obvious tracheoesophageal fistula. The pediatric surgical team admits the infant to the neonatal intensive care unit for preoperative stabilization, nasogastric decompression, intravenous fluids, and broad-spectrum antibiotics as indicated. After preoperative evaluation, the pediatric surgeon performs a thoracotomy to repair the congenital esophageal discontinuity with primary esophageal anastomosis and reconstruction of the esophageal continuity. Intraoperative steps include thoracic exposure via right thoracotomy, mobilization of proximal and distal esophageal segments, primary end-to-end anastomosis with or without protective gastrostomy, and chest tube placement for postoperative drainage. Postoperative course includes ventilatory support as needed, enteral nutrition via gastrostomy or transgastric feeds until anastomotic integrity is confirmed by contrast study, and monitoring for anastomotic leak, stricture, or recurrent fistula. Typical clinicians involved include a pediatric surgeon, pediatric anesthesiologist, neonatal intensivist, and pediatric nursing staff. Typical site of service is an inpatient operating room within a tertiary-care pediatric hospital or children’s hospital with NICU capability. Service type: surgical repair/reconstruction of congenital esophageal defect via thoracotomy.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    31620Repair tracheoesophageal fistula with or without esophageal anastomosis; neonatalPerformed when a tracheoesophageal fistula is present in addition to esophageal atresia; distinct from 43313 which excludes fistula repair.
    43752Closure of gastrostomy, open or laparoscopicMay be performed later if a gastrostomy was placed temporarily to provide nutrition during esophageal healing.
    32551Tube thoracostomy, includes water seal (e.g., chest tube)Often performed at the time of 43313 for postoperative pleural drainage.
    51702Bladder catheterization, simple; male or femaleRoutine perioperative urinary catheterization during major neonatal surgery.
    76942Ultrasonic guidance for needle placement (e.g., paracentesis, drainage)May be used intra- or postoperatively for guidance of pleural or mediastinal drain placement.
    99223Initial hospital care, usually 70 minutes or more, for complex neonateExample of an appropriate initial inpatient visit code for high-complexity preoperative or postoperative management.

    Related Modifiers

    10 rows

    ModifierDescriptionWhen to Use
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    23Modifier -23 (Unusual Anesthesia) is used on anesthesia service CPT codes when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia…- Use modifier -23 only on anesthesia CPT codes (00100–01999) when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia because of…
    62Modifier 62 indicates that two surgeons function as co‑surgeons, each performing distinct parts of the same primary surgical procedure. It is appended to the primary procedure code (and any…- Use modifier -62 when two surgeons act as co‑surgeons (both primary surgeons) on a single definitive primary procedure, each performing distinct parts of the same surgical procedure (append -62 to…
    63Modifier‑63 is appended to surgical CPT codes (20000–69990) when a procedure is performed on a neonate or infant weighing ≤ 4 kg (about 8.8 lbs). The AMA/AAPC definition specifies this use and notes…- Use modifier -63 only for surgical procedures in the CPT 20000–69990 series performed on a neonate or infant who weighs ≤ 4 kg at the time of the procedure; it indicates increased complexity due to…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    78CPT modifier -78 indicates an unplanned, related return to the operating or procedure room by the same provider during the global postoperative period. It is appended when treatment for a…- Use modifier -78 when an unplanned, related complication during the original procedure’s global postoperative period requires the patient to return to a formal operating or procedure room and the…
    79Modifier 79 indicates a surgical procedure performed during the postoperative global period of a prior surgery that is unrelated to the original procedure. Per AMA/CPT and CMS guidance, it is…- Use modifier 79 when the same physician (or same‑specialty physician in the same group) performs a surgical procedure during the postoperative global period of a prior surgery and the new procedure…
    26Modifier 26 (Professional Component) identifies and bills only the professional portion of a split service — the physician’s interpretation, report, and medical judgment — when the technical…- Use CPT Modifier -26 when you are billing only the professional component (PC) of a split‑bill eligible service—i.e., you performed the physician interpretation, medical judgment and prepared a…
    50Modifier –50 (Bilateral Procedure) is appended to a CPT code when an identical procedure is performed on paired anatomical structures during the same operative session. The AMA states to add…- Use modifier -50 when the same CPT surgical, diagnostic, or radiology procedure is performed on paired anatomical structures (both sides of the body) during the same operative/session by the same…

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    207V00000X
    207P00000X
    208100000X
    207L00000X
    2086S0127X
    363LN0005X
    363LP2300X
    163WP0809X

    Related ICD-10-CM Codes

    25 rows

    ICD-10-CM CodeDescription
    E86.0Dehydration
    J94.2Hemothorax
    K22.2Esophageal obstruction
    K22.9Disease of esophagus, unspecified
    P27.1Bronchopulmonary dysplasia originating in the perinatal period
    P28.5Respiratory failure of newborn
    Q38.1Ankyloglossia
    Q38.2Macroglossia
    Q39.0Atresia of esophagus without fistula
    Q39.1Atresia of esophagus with tracheo-esophageal fistula

    Showing 1–10 of 25

    Related Payer Policy Updates

    Specialty: Gastroenterology1 / 3

    10 rows

    PolicyPayerEffective Date
    Percutaneous Electrical Nerve Field Stimulation for Functional Abdominal Pain Disordersbcbsvermont2026-12-01
    Esophagogastroduodenoscopy (EGD) Coverage Policyevicore2026-11-05
    Radiofrequency Therapy for Fecal IncontinenceCigna2026-10-15
    Magnetic Sphincter Augmentation for the Treatment of Gastroesophageal Reflux Disease (GERD)univerahealthcare2026-10-15
    High-Resolution Anoscopy (HRA)Premera Bluecross2026-10-01
    Gastroesophageal and Gastrointestinal (GI) Services and ProceduresColorado Rocky Mountain Health Plans2026-10-01
    Fecal Analysis in the Diagnosis of Intestinal Dysbiosis and Fecal Microbiota Transplant TestingOscar Health2026-10-01
    Serum Testing for Hepatic Fibrosis in the Evaluation and Monitoring of Chronic Liver DiseaseOscar Health2026-10-01
    Pancreatic Enzyme Testing for Acute PancreatitisOscar Health2026-10-01
    Helicobacter pylori TestingOscar Health2026-10-01

    Related Codes

    CPT-43300-ESOPHAGEAL-RECONSTRUCTION-CERVICAL-APPROACH

    CPT 43300: Esophageal Repair or Reconstruction via Cervical Incision

    CPT-43305-ESOPHAGEAL-REPAIR-CERVICAL-APPROACH-TRACHEOESOPHAGEAL-FISTULA-REPAIR

    CPT 43305: Esophageal Repair via Cervical Approach

    CPT-43310-ESOPHAGEAL-RECONSTRUCTION-THORACOTOMY

    CPT 43310: Esophageal Repair or Reconstruction via Thoracotomy

    CPT-43312-ESOPHAGEAL-RECONSTRUCTION-TRACHEOESOPHAGEAL-FISTULA-REPAIR

    CPT 43312: Esophageal Reconstruction and Tracheoesophageal Fistula Repair

    CPT-43314-CONGENITAL-ESOPHAGEAL-REPAIR-THORACOTOMY

    CPT 43314: Reconstruction of Congenital Esophageal Defect via Thoracotomy

    CPT-43320-LOWER-ESOPHAGUS-UPPER-STOMACH-REPAIR-OPEN-SURGERY

    CPT 43320: Plastic Repair of Lower Esophagus and Upper Stomach

    CPT-43325-DISTAL-ESOPHAGUS-REPAIR-WITH-FUNDIC-PATCH

    CPT 43325: Repair of Distal Esophagus with Fundic Patch

    CPT-43327-FUNDOPLASTY-OPEN-FUNDOPLICATION-ABDOMINAL-APPROACH

    CPT 43327: Partial or Complete Fundoplasty, Abdominal Approach

    CPT-43328-THORACIC-FUNDOPLASTY-FUNDOPLICATION-CHEST-APPROACH

    CPT 43328: Partial or Complete Fundoplasty via Thoracic Incision

    CPT-43330-ESOPHAGEAL-REPAIR-ABDOMINAL-APPROACH

    CPT 43330: Open Abdominal Esophageal Repair (Flap Creation and Suturing)

    Showing 1–10 of 30

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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