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    v1.0.30
    OpenPayerBilling CodesRepair Procedures on the DiaphragmCPT cpt-39561-diaphragm-resection-and-repair
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    CPT 39561: Diaphragm Resection with Involved Repair

    Medicare pays $1231 on average nationally for this procedure.

    CPT code 39561 describes resection of the diaphragm with an involved repair technique, which may include insertion of prosthetic material or closure using a local muscle flap; this is typically performed as a surgical procedure to remove diseased or tumor-infiltrated diaphragmatic tissue. Service type: surgical resection and reconstruction. Typical site of service: inpatient or operating room-based thoracic/abdominal surgical setting.

    For related coverage guidance, see recent payer policy updates: Automated Ambulatory Blood Pressure Monitoring for Diagnosis of Hypertension in Patients with Elevated Office Blood Pressure, Cardiology - Ivabradine, Cardiac Computed Tomography (CCT)/Coronary Computed Tomographic Angiography (CCTA).

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    Clinical & Coding Specifications

    Clinical Context

    A 62-year-old patient with a history of advanced non-small cell lung carcinoma presents with radiographic evidence of tumor invasion into the right hemidiaphragm with localized diaphragmatic mass and chest wall pain. Multidisciplinary tumor board recommends surgical resection of involved diaphragm tissue to achieve local control. The patient is evaluated preoperatively with chest CT and PET to define extent of disease and fitness for anesthesia. In the operating room under general endotracheal anesthesia, a thoracic surgeon performs an open thoracotomy, resects the involved segment of diaphragm using an involved repair technique, and reconstructs the defect with either primary layered closure, a local muscle flap, or placement of prosthetic mesh as needed. Intraoperative frozen section may be used to assess margins. Postoperative care includes chest tube management, pain control, pulmonary hygiene, and surveillance imaging. The procedure is commonly billed when diaphragmatic tissue is excised for tumor spread or other localized disease requiring an involved repair and possible prosthetic reconstruction.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    32551Thoracotomy with chest tube placement (insertion)Chest access and postoperative chest tube management commonly accompany diaphragmatic resection performed via thoracotomy.
    35531Excision, chest wall tumor; full-thickness including diaphragm if performed separatelyPerformed when chest wall tumor resection is required in addition to diaphragmatic resection; may be done in same operative session.
    15734Muscle or myocutaneous flap; trunkUsed when a local muscle flap is harvested to reconstruct the diaphragm defect.
    49568Implantation of mesh or other prosthesis for hernia or diaphragm repair (similar prosthetic placement)Applied when prosthetic material is used to close the diaphragmatic defect after resection.
    88305Surgical pathology, gross and microscopic examinationUsed for histopathologic evaluation of resected diaphragmatic tissue and margin assessment.

    Related Modifiers

    12 rows

    ModifierDescriptionWhen to Use
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    23Modifier -23 (Unusual Anesthesia) is used on anesthesia service CPT codes when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia…- Use modifier -23 only on anesthesia CPT codes (00100–01999) when a procedure that normally requires no anesthesia or only local anesthesia must be performed under general anesthesia because of…
    26Modifier 26 (Professional Component) identifies and bills only the professional portion of a split service — the physician’s interpretation, report, and medical judgment — when the technical…- Use CPT Modifier -26 when you are billing only the professional component (PC) of a split‑bill eligible service—i.e., you performed the physician interpretation, medical judgment and prepared a…
    50Modifier –50 (Bilateral Procedure) is appended to a CPT code when an identical procedure is performed on paired anatomical structures during the same operative session. The AMA states to add…- Use modifier -50 when the same CPT surgical, diagnostic, or radiology procedure is performed on paired anatomical structures (both sides of the body) during the same operative/session by the same…
    51Modifier –51 (Multiple Procedures) is used when the same provider performs multiple procedures in the same session to identify secondary, non‑exempt procedures and indicate payment reduction logic…- Use modifier -51 when the same provider performs multiple distinct procedures during the same patient encounter: report the highest‑valued procedure first (no modifier) and append -51 to…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    62Modifier 62 indicates that two surgeons function as co‑surgeons, each performing distinct parts of the same primary surgical procedure. It is appended to the primary procedure code (and any…- Use modifier -62 when two surgeons act as co‑surgeons (both primary surgeons) on a single definitive primary procedure, each performing distinct parts of the same surgical procedure (append -62 to…
    66Modifier 66 (Surgical Team) is used when three or more surgeons act as primary surgeons on a single, highly complex procedure. The AMA defines it for use when a surgical team — often composed of…- Use modifier 66 when three or more surgeons act as primary surgeons working collaboratively as a surgical team on a single, highly complex or difficult procedure (for example organ…
    78CPT modifier -78 indicates an unplanned, related return to the operating or procedure room by the same provider during the global postoperative period. It is appended when treatment for a…- Use modifier -78 when an unplanned, related complication during the original procedure’s global postoperative period requires the patient to return to a formal operating or procedure room and the…

    Showing 1–10 of 12

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    2084P0800X
    2080P0202X
    207RH0000X
    207L00000X
    1835P1400X
    364SP1700X
    204E00000X
    207SC0300X

    Related Payer Policy Updates

    Specialty: Cardiology1 / 2

    10 rows

    PolicyPayerEffective Date
    Automated Ambulatory Blood Pressure Monitoring for Diagnosis of Hypertension in Patients with Elevated Office Blood PressureBluecross Idaho2026-11-01
    Cardiology - IvabradineCigna2026-10-15
    Cardiac Computed Tomography (CCT)/Coronary Computed Tomographic Angiography (CCTA)univerahealthcare2026-10-15
    Percutaneous Ventricular Assist DeviceUnitedHealthcare2026-10-01
    Cardiovascular Disease Risk AssessmentOscar Health2026-10-01
    Biomarkers for Myocardial Infarction and Chronic Heart FailureOscar Health2026-10-01
    Multiple Procedure Payment Reduction for Diagnostic Cardiovascular ProceduresBlue Cross Blue Shield - Maine2026-10-01
    Left Atrial Appendage Closure Devicesexcellus_health_plan_inc2026-09-17
    Left Atrial Appendage Closure Devicesuniverahealthcare2026-09-17
    Cardiac Omnibus CodesCigna2026-09-15

    Related Codes

    CPT-39501-DIAPHRAGM-REPAIR-TRAUMATIC-TEAR

    CPT 39501: Repair of Traumatic Diaphragmatic Tear

    CPT-39503-CONGENITAL-DIAPHRAGMATIC-HERNIA-REPAIR-NEWBORN

    CPT 39503: Congenital Diaphragmatic Hernia Repair, Newborn

    CPT-39540-TRAUMATIC-DIAPHRAGMATIC-HERNIA-REPAIR

    CPT 39540: Surgical Repair of Traumatic Diaphragmatic Hernia

    CPT-39541-RECURRENT-TRAUMATIC-DIAPHRAGMATIC-HERNIA-REPAIR

    CPT 39541: Repair of Recurrent Traumatic Diaphragmatic Hernia

    CPT-39545-DIAPHRAGMATIC-PLICATION-REPAIR-ELEVATED-DIAPHRAGM

    CPT 39545: Diaphragmatic Plication/Repair for Elevated Diaphragm

    CPT-39560-DIAPHRAGM-RESECTION-AND-PRIMARY-REPAIR

    CPT 39560: Diaphragm Resection with Primary Repair

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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