Loading...
Defines coverage criteria, limitations, and clinical indications for laboratory testing for Chlamydia trachomatis (CT), Neisseria gonorrhoeae (NG), Treponema pallidum (syphilis), herpes simplex virus (HSV-1/HSV-2), and human papillomavirus (HPV). Also addresses PrEP-related screening and notes tests/panels that are not covered.
No material clinical/coverage changes in this update.
This policy defines coverage for diagnostic laboratory testing of common sexually transmitted infections — specifically Chlamydia trachomatis (CT), Neisseria gonorrhoeae (NG), Treponema pallidum (syphilis), herpes simplex virus (HSV‑1/HSV‑2), and human papillomavirus (HPV) — and addresses PrEP‑related monitoring. The policy status is CURRENT and the coverage stance is mixed: it prefers NAAT methods for CT/NG and lesion‑based NAAT/culture/PCR for HSV, supports guideline‑based serologic two‑tiered testing for syphilis, and restricts HPV testing to cancer‑related or age‑based cervical screening indications. PrEP monitoring (baseline and interval testing) is explicitly included in covered indications.
Syphilis antibody testing - Medically Necessary
Antibody testing for syphilis infection MEETS COVERAGE CRITERIA in the following situations:
ALL of the following
Syphilis antibody testing - Asymptomatic not high-risk
For asymptomatic individuals NOT belonging to a high-risk category, antibody screening for syphilis MEETS COVERAGE CRITERIA only in the following situations:
ANY of the following
Syphilis PCR/NAAT
Tests that do not meet coverage criteria:
ANY of the following
Chlamydia NAAT - Medically Necessary
NAAT for chlamydia MEETS COVERAGE CRITERIA in the following situations:
ANY of the following
See Note 3 for high-risk definitions.
See clinical signs/symptoms definitions.
Refer positives to LGV-discriminatory NAAT as indicated.
Chlamydia testing - Asymptomatic not high-risk
For asymptomatic individuals NOT belonging to a high-risk category, screening for chlamydia MEETS COVERAGE CRITERIA only in the following situations:
ANY of the following
Chlamydia serology
Serologic testing not covered:
ANY of the following
Gonorrhea NAAT and culture
NAAT for gonorrhea MEETS COVERAGE CRITERIA in the following situations:
ANY of the following
See Note 3 for high-risk definitions.
See clinical signs/symptoms definitions.
Follow guideline-specified timing per organism/site.
Gonorrhea screening - Asymptomatic not high-risk
For asymptomatic individuals NOT belonging to a high-risk category, screening for gonorrhea MEETS COVERAGE CRITERIA only in the following situations:
ANY of the following
Multitarget PCR for CT/NG
When both chlamydia and gonorrhea conditions are met:
ALL of the following
Targets must be limited to CT and NG.
HSV testing - lesion-based NAAT/culture
HSV testing coverage:
ANY of the following
PCR is preferred as most sensitive.
HSV serology
Type-specific and general serologic testing coverage:
ANY of the following
HPV testing - covered indications
Testing for HPV MEETS COVERAGE CRITERIA in the following situations:
ANY of the following
Ages 30-65 only.
HPV testing - not covered situations
Testing for HPV DOES NOT MEET COVERAGE CRITERIA in the following situations:
ANY of the following
PrEP-related testing (pre-initiation and during PrEP)
Prior to and during PrEP regimens, the following tests meet coverage criteria:
ALL of the following
Prior to beginning PrEP
During PrEP
Quantitative NAAT for microorganisms
Not covered due to lack of evidence:
ANY of the following
Testing modality and indication principles
Covered/appropriate testing approaches when clinical indications or screening criteria are met according to cited guideline sources:
ANY of the following
Near-patient NAATs preferred over POCT antigen tests due to higher sensitivity.
Guideline-based testing indications and frequency (summarized)
Testing recommended per referenced organizations when criteria are met:
ANY of the following
Tests that DO NOT MEET COVERAGE CRITERIA
Consolidated list of tests that DO NOT MEET COVERAGE CRITERIA and their stated rationales:
| BD Onclarity HPV Assay | FDA-approved qualitative NAAT for cervical swabs identifying HPV 16, 18, 45 and other high-risk HPV types; indicated for specified age/cytology contexts per FDA labeling. |
| Cepheid Xpert CT/NG | FDA-approved NAAT for Chlamydia trachomatis and Neisseria gonorrhoeae for urogenital and extragenital specimens (urine, patient-collected vaginal swabs, endocervical, pharyngeal, rectal) performed on GeneXpert systems; rapid ~90-minute turnaround. |
| 82565 | Creatinine; blood. |
| 82575 | Creatinine; clearance. |
| 84702 | Gonadotropin, chorionic (hCG); quantitative. |
| 84703 | Gonadotropin, chorionic (hCG); qualitative. |
| 86592 | Syphilis test, non-treponemal antibody; qualitative (eg, VDRL, RPR, ART). |
| 86593 | Syphilis test, non-treponemal antibody; quantitative. |
| 86631 | Antibody; Chlamydia. |
| 86632 | Antibody; Chlamydia, IgM. |
| 86694 | Antibody; herpes simplex, non-specific type test. |
| 86695 | Antibody; herpes simplex, type 1. |
| 0064U | BioPlex 2200 Syphilis Total & RPR Assay (Bio-Rad Laboratories) - treponemal total and RPR immunoassay proprietary test. |
| 0065U | BioPlex 2200 RPR Assay (Bio-Rad Laboratories) - syphilis non-treponemal immunoassay (RPR). |
| 0096U | HPV High-Risk, Male Urine proprietary test (Molecular Testing Labs/Roche Cobas) for high-risk HPV types in male urine. |
| 0167U | ADEXUSDx hCG Test (NOWDiagnostics) - hCG immunoassay with direct optical observation (proprietary). |
| 0210U | BioPlex 2200 RPR Assay - Quantitative (Bio-Rad Laboratories) proprietary quantitative non-treponemal RPR immunoassay. |
Use of two-tiered serologic algorithm for syphilis
When screening or diagnosing syphilis, use a two-tiered serologic algorithm (standard or reverse) that includes both treponemal and nontreponemal testing. Document the clinical indication for testing (symptoms, high‑risk status, pregnancy, sexual assault, newborn) to support coverage.
Coverage dependent on member benefits
Coverage of requested tests depends on the member's specific benefits. Verify the member's plan benefits and applicable Medicare/Medicaid specifications (LCD/NCD or state Medicaid rules) prior to ordering or billing.
Use appropriate FDA-approved assay per indication
Order and bill assays consistent with FDA indications and the clinical scenarios described in this policy. Use FDA‑approved assays for their indicated specimen types and indications (for example, BD Onclarity per its cervical/cytology indications and Cepheid Xpert CT/NG for FDA‑cleared specimen types). Follow manufacturer instructions and applicable indications when selecting assays to bill.
PrEP monitoring schedule
For persons on PrEP document baseline and interval monitoring as specified: baseline HIV antigen/antibody testing, serum creatinine/estimated creatinine clearance, hepatitis B/C screening, and pregnancy testing. During PrEP document HIV testing every 3 months, serum creatinine at 3 months then per schedule, pregnancy testing every 3 months as indicated, and NAAT screening for gonorrhea and chlamydia at anatomic exposure sites at the required intervals (eg, every 3 months for MSM and individuals with childbearing potential, then per guidance).
Reflex testing for syphilis algorithms
Follow reflex testing procedures for syphilis algorithms: if a treponemal test is positive, perform reflex quantitative nontreponemal testing on the same serum; if a nontreponemal test is positive, perform reflex treponemal testing on the same serum; when both TT and NTT are used, ensure the NTT is quantitative when positive or discrepant.
Use of NAATs and specimen site selection
Collect NAAT specimens from the anatomic sites that correspond to reported exposures and per manufacturer/CLIA/FDA guidance: first‑catch urine, clinician‑ or patient‑collected vaginal/endocervical swabs, urethral swabs, rectal swabs, and pharyngeal swabs. Document the exposure sites and ensure specimen type is consistent with the assay's validated/FDA‑cleared or locally validated uses.
POCT/near-patient NAAT use
Point‑of‑care or near‑patient NAATs (eg, GeneXpert/Cepheid) may be used to enable same‑day treatment and improved management. Ensure tests are used for manufacturer‑cleared specimen types; for extragenital uses that are not FDA‑cleared, laboratories must perform local CLIA validation and follow manufacturer instructions before billing.
HSV serology limited use
Do not perform routine HSV serologic screening in asymptomatic patients. Reserve type‑specific serology for indicated scenarios (pregnancy evaluation, partner evaluation, recurrent or atypical disease, or when PCR/culture is negative but clinical suspicion persists).
Specimen and test selection documentation
Document sexual exposure history (eg, receptive oral/anal intercourse, urethral exposure) and the chosen specimen source (urine, vaginal/cervical swab, pharyngeal swab, rectal swab, lesion fluid) to justify NAAT, culture, PCR, or serologic testing per guidelines and assay indications.
Follow-up testing documentation
Document clinical reasons for follow‑up culture or repeat testing when indicated: test‑of‑cure, suspected antimicrobial resistance, pregnancy, uncertain compliance, persistent symptoms, pharyngeal/rectal infection, or disseminated disease. Follow guideline‑specific timing for TOC and susceptibility testing (eg, gonorrhea culture for susceptibility; NAAT or culture timing per guidance).
Procedure code use for proprietary tests
Report the following proprietary CPT codes when using the referenced manufacturer/lab assays as listed in this policy.
Medico-legal confirmation
For medico‑legal cases (such as sexual assault), obtain cultures of cervical or urethral specimens and/or confirm NAAT positives with an alternate method (different primer set, DNA sequencing, or culture) per guideline recommendations. Document the confirmatory method and chain‑of‑custody/medico‑legal justification.
Check government/local coverage conflicts
If a government or local coverage determination (LCD/NCD or state Medicaid) conflicts with this policy for a given member, follow the applicable government policy. Verify Medicare and state Medicaid coverage prior to ordering or billing.
Chlamydia and gonorrhea are common bacterial STIs in the U.S.; untreated infections can cause pelvic inflammatory disease (PID), infertility, pregnancy complications, neonatal infection, urethritis, proctitis, and other sequelae. NAAT is the gold standard for CT and NG due to high sensitivity and specificity and is recommended on first‑catch urine or appropriate swab specimens including extragenital sites; culture remains important for NG when antimicrobial susceptibility testing is needed. (CDC/IUSTI/BASHH guidance and studies support near‑patient NAATs and the Cepheid Xpert CT/NG platform for rapid diagnosis and same‑day treatment.)
Syphilis, caused by Treponema pallidum, can be asymptomatic or progress to serious cardiac and neurologic disease and can be transmitted congenitally; maternal screening and repeat testing in pregnancy are public‑health priorities. The standard diagnostic approach is a two‑tiered serologic algorithm using treponemal and nontreponemal tests (TT and quantitative NTT such as RPR/VDRL) with reflex testing rules (eg, reflex quantitative NTT for positive TT). Direct detection (darkfield, PCR) can confirm early lesion‑based disease but NAAT/PCR for T. pallidum is not a routine covered replacement for serology.
HSV infections are common and often asymptomatic; vertical transmission risk exists with primary infection near delivery. For patients with active genital or mucocutaneous lesions, viral culture or NAAT/PCR of lesion material is preferred (PCR has greatest sensitivity/specificity). Routine HSV serologic screening in asymptomatic individuals is not recommended; type‑specific serology (gG2) has limited, defined indications (eg, recurrent atypical lesions with negative PCR/culture, partner with genital herpes, or clinical counseling).
HPV is the most common anogenital viral infection and is linked to multiple cancers. HPV NAAT and p16 IHC are supported only for diagnostic/cancer assessment or per cervical cancer screening guidelines (eg, women aged 30–65: HPV testing alone every 5 years or cotesting per guidelines). The BD Onclarity HPV Assay is an FDA‑approved PCR‑based NAAT example for cervical specimens; FDA‑cleared NAATs (eg, Cepheid Xpert CT/NG) are cited for CT/NG detection across specimen types.
| Evidence/Measure | Value |
|---|---|
| Trep-Sure EIA performance | |
| Sensitivity 98.0%, Specificity 98.6% (Wong et al., 2011) | |
| TPPA assay | |
| Sensitivity 87.1%, Specificity 100% (Juarez-Figueroa et al., 2007) | |
| USPSTF HSV-2 serology pooled estimates | |
| Sensitivity 99%, Specificity 81% at manufacturer's cutpoint; high false-positive rate in general population (Feltner et al., 2016) | |
| POCT sensitivity for chlamydia (pooled) | |
| Sensitivity: 53% cervical, 37% vaginal, 63% male urine; Specificity 97-99% (Kelly et al., 2017) | |
| Near-patient NAAT sensitivity | |
| >98% sensitivity and 99.4% specificity across sample types (Kelly et al., 2017) | |
| Xpert CT/NG agreement vs APTIMA (extragenital) | |
| Rectal CT pooled positive agreement 89.72% and negative agreement 99.23%; similar performance with faster turnaround (Bristow et al., 2019) | |
| Syphilis PCR sensitivity/specificity | |
| PCR sensitivity 68% and specificity 99% vs serology sensitivity 97% (Brischetto et al., 2018) | |
| HerpeSelect pooled serology | |
| Sensitivity 99%, Specificity 81% (Feltner et al., 2016) | |
| Guideline concordance | |
| Multiple national/international guidelines cited (CDC, USPSTF, NCCN, BASHH, CPS, IUSTI, NICE, etc.) | |
| NAAT performance (general) | |
| NAATs approach high sensitivity and specificity and are preferred for genital and extragenital CT/NG testing | |
| Reference count (approx) | |
| 40+ citations referenced in policy |
High‑risk for Syphilis: includes MSM, sexually active HIV‑positive persons, partners recently diagnosed with an STI, exchange of sex for money or drugs, incarceration, and specific pregnancy risk factors (eg, multiple partners, late/no prenatal care, substance use).
High‑risk for Chlamydia/Gonorrhea: includes MSM, sexually active HIV‑positive persons, sexually active women <25 years, women ≥25 with multiple partners, partners recently diagnosed with an STI, prior or concurrent STI, and exchange of sex for money or drugs.
TOC (Test of Cure): a follow‑up diagnostic test performed after treatment to confirm eradication of infection (for example, chlamydia/gonorrhea retest at ~3 months; gonorrhea test‑of‑cure timing per guidelines).
NAAT (Nucleic Acid Amplification Test): a molecular assay that detects pathogen DNA or RNA; preferred method for diagnosing CT and NG and for lesion‑based HSV testing due to superior sensitivity and specificity.
TT (Treponemal Test): treponemal assays for syphilis such as TPHA, TPPA, EIA/ELISA/CLIA, used in two‑tiered serologic algorithms.
NTT (Nontreponemal Test): assays like RPR or VDRL that detect non‑treponemal antibodies and are often quantitative to assess disease activity and response to therapy.
MSM: men who have sex with men.
LGV (Lymphogranuloma venereum): an invasive C. trachomatis infection; diagnosis requires initial NAAT detection of C. trachomatis followed by LGV‑discriminatory NAAT on the same specimen.
Culture required for susceptibility testing/resistance concerns.
i) Once every three months for MSM and for individuals with child-bearing potential; ii) Nine months after PrEP is initiated and once every six months thereafter for sexually active individuals.
Once every three months for MSM and for individuals with child-bearing potential; nine months after initiation then every six months for sexually active individuals.
If TT used alone and positive, perform reflex quantitative NTT; if NTT used alone and positive, perform reflex TT; ensure NTT is quantitative when both used.