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    v1.0.30
    OpenPayerBilling CodesMedical Genetics and Genetic Counseling ServicesCPT cpt-96041-genetic-counseling-risk-assessment-30-min
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    CPT 96041: Genetic Counseling and Family Risk Assessment

    CPT code 96041 describes a service in which a trained nonphysician genetic counselor performs analysis of a patient’s family risk factors and available medical information and provides genetic counseling to the patient and, when appropriate, family members; the code is billed for each 30 minutes of total time on the encounter date and is typically delivered as a genetic counseling visit in outpatient clinic or telehealth settings by a certified genetic counselor.

    For related coverage guidance, see recent payer policy updates: Oral Cancer Screening and Testing, RTM Testing for Alpha-1 Antitrypsin Deficiency, Cytochrome P450 Genotype-Guided Treatment Strategy Corporate Medical Policy.

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    Clinical & Coding Specifications

    Clinical Context

    A 35-year-old woman with a family history of breast and ovarian cancer is referred for genetic counseling after a relative tested positive for a pathogenic BRCA1 variant. The patient presents for a comprehensive risk assessment visit with a trained nonphysician genetic counselor. The counselor reviews the three-generation family pedigree, collects personal and medical history, assesses cancer risk models, and evaluates prior genetic test results. The encounter includes review of available medical records, discussion of indications, limitations, and potential outcomes of targeted or panel genetic testing, psychosocial implications, and management options. The genetic counselor spends 30-minute increments providing direct counseling, documenting risk estimates, and coordinating testing logistics or referrals. The typical workflow includes intake and record collection, risk assessment and counseling session, informed consent discussion if testing is pursued, and documentation of the encounter and recommendations in the medical record. A typical site of service is an outpatient genetics clinic, specialty ambulatory clinic, or telehealth setting with genetic counseling by a certified genetic counselor or trained nonphysician genetic counselor using 96041 billed per 30 minutes of total counseling time.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    96040Medical genetics and genetic counseling services provided by a physician or other qualified health care professional, face-to-face, with patient and/or family; first 30 minutesOften billed by physician-providers for similar counseling services; 96041 is the nonphysician genetic counselor counterpart billed per 30 minutes.
    81162BRCA1 and BRCA2 full sequence analysis (if listed)Genetic test commonly ordered following counseling for hereditary breast/ovarian cancer risk; ordered as part of the workflow after 96041 counseling.
    81211EGFR gene analysis, common variants (example somatic)Genetic test examples may be discussed during counseling when clarifying implications of somatic vs germline testing; testing itself is billed separately.
    88271Cytogenomic constitutional microarray analysis; pre- and post-test counseling and interpretationLarger genomic tests may be recommended; counselor documents counseling around indications and results interpretation following 96041 counseling.
    99441Telephone evaluation and management service by a physician or other qualified health care professional, 5-10 minutes of medical discussionShort telephone follow-up or triage calls related to genetic counseling can occur before or after the formal counseling session billed with 96041.

    Related Modifiers

    6 rows

    ModifierDescriptionWhen to Use
    25CPT modifier 25 indicates that on the same day as another procedure or service, the same physician or other qualified health care professional provided a significant, separately identifiable…- When to apply: Use modifier 25 only on an E/M code to indicate the same provider delivered a significant, separately identifiable E/M service on the same day as another procedure or service — i.e.,…
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    59Modifier 59 indicates a distinct procedural service when two procedures that are not normally billed together are clinically and procedurally separate. The CPT definition (as reiterated by CMS)…- Use modifier -59 to report a distinct procedural service when documentation supports that the procedure reported is not normally billed together with another service on the same day because of a…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    95Modifier 95 indicates that a service was provided via synchronous, real‑time audio‑video telehealth rather than in‑person. Per CMS, AAPC and professional associations, append modifier 95 to claim…- Use modifier 95 to indicate a service was furnished via synchronous, real‑time audiovisual telehealth (a live audio‑video conference between patient and provider) rather than in‑person. - Pair…

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    163W00000X
    2084P0800X
    2080S0012X
    207Q00000X
    246ZE0600X
    103TH0100X
    104100000X
    261QM3000X

    Related Payer Policy Updates

    Specialty: Genetic & Molecular Testing1 / 2

    10 rows

    PolicyPayerEffective Date
    Oral Cancer Screening and TestingOscar Health2027-01-01
    RTM Testing for Alpha-1 Antitrypsin DeficiencyOscar Health2027-01-01
    Cytochrome P450 Genotype-Guided Treatment Strategy Corporate Medical Policybcbsvermont2027-01-01
    Carrier Testing Panels for Genetic Diseases (for Kentucky Only)UnitedHealthcare2026-10-01
    Genetic Testing for Neurological Disorders (for Kansas Only)UnitedHealthcare2026-10-01
    Genetic and Molecular TestingProvidence Health Plan2026-10-01
    Cell-Free Fetal DNA Testing (for Idaho Only)UnitedHealthcare2026-10-01
    Next Generation Sequencing for Minimal Residual Disease DetectionProvidence Health Plan2026-10-01
    Pharmacogenetic Panel Testing (for Kansas Only)UnitedHealthcare2026-10-01
    Non-Covered Genetic Panel TestsProvidence Health Plan2026-10-01

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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