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    v1.0.30
    OpenPayerBilling CodesOther Procedures on the Biliary TractCPT cpt-47999-biliary-tract-unlisted-procedure
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    CPT 47999: Unlisted Procedure, Biliary Tract

    CPT code 47999 is used to report an unlisted biliary tract procedure when no specific CPT code describes the procedure performed; it represents surgical or endoscopic procedures on the biliary system and is typically reported for operative biliary interventions provided in hospital operating rooms, endoscopy suites, or similar procedural settings.

    For related coverage guidance, see recent payer policy updates: Percutaneous Electrical Nerve Field Stimulation for Functional Abdominal Pain Disorders, Esophagogastroduodenoscopy (EGD) Coverage Policy, Radiofrequency Therapy for Fecal Incontinence.

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    Table of contents

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    Clinical & Coding Specifications

    Clinical Context

    A 62-year-old patient with recurrent cholangitis and suspected complex biliary stricture undergoes an operative biliary procedure that does not have a specific CPT code. The patient presents after several ERCP attempts with persistent biliary obstruction and requires an open or laparoscopic intraoperative biliary exploration with atypical maneuvers such as complex biliary reconstruction, removal of an impacted biliary foreign body, or novel drainage technique. Typical workflow: preoperative evaluation by a hepatobiliary or general surgeon and anesthesia assessment; informed consent including explanation that an unlisted biliary procedure may be billed with 47999; intraoperative documentation of the exact operative steps, time, personnel, and any implants or devices; selection of appropriate modifier(s) to denote bilateral procedures, assistant surgeon, technical/professional components, or unusual services; and submission of operative report and itemized operative records to payors (Aetna, Blue Cross Blue Shield, Cigna Health, UnitedHealthcare, BUCA, Medicare) with supporting documentation that justifies use of 47999 and the chosen modifiers.

    Related CPT Codes

    CPT CodeDescriptionRelationship to This Procedure
    47562Laparoscopy, surgical; cholecystectomy with cholangiographyPerformed before or instead of unlisted biliary procedures when gallbladder removal with duct evaluation is indicated.
    47563Laparoscopy, surgical; cholecystectomy with exploration of common bile ductRelated biliary exploration code commonly used when standard technique applies; 47999 used when procedure differs substantially.
    43262Endoscopic retrograde cholangiopancreatography, with sphincterotomy and/or stone removalEndoscopic therapeutic biliary procedure often attempted prior to operative unlisted biliary surgery.
    47540Cholecystostomy, percutaneous, tube or catheter placementPercutaneous biliary drainage procedure that may be an alternative or adjunct to operative unlisted biliary procedures.
    47579Unlisted laparoscopic procedure, biliary tractAnother unlisted option for laparoscopic biliary procedures; selection depends on operative approach and payer guidance.

    Related Modifiers

    9 rows

    ModifierDescriptionWhen to Use
    22Modifier –22 (Increased Procedural Services) is used when a reported procedure is substantially more extensive than normally required. The CPT Manual and CMS state it may be appended only when the…- When to use: Append modifier -22 to a procedural CPT code when the service performed is substantially more extensive than the usual service described by that code — i.e., the procedure required…
    26Modifier 26 (Professional Component) identifies and bills only the professional portion of a split service — the physician’s interpretation, report, and medical judgment — when the technical…- Use CPT Modifier -26 when you are billing only the professional component (PC) of a split‑bill eligible service—i.e., you performed the physician interpretation, medical judgment and prepared a…
    50Modifier –50 (Bilateral Procedure) is appended to a CPT code when an identical procedure is performed on paired anatomical structures during the same operative session. The AMA states to add…- Use modifier -50 when the same CPT surgical, diagnostic, or radiology procedure is performed on paired anatomical structures (both sides of the body) during the same operative/session by the same…
    51Modifier –51 (Multiple Procedures) is used when the same provider performs multiple procedures in the same session to identify secondary, non‑exempt procedures and indicate payment reduction logic…- Use modifier -51 when the same provider performs multiple distinct procedures during the same patient encounter: report the highest‑valued procedure first (no modifier) and append -51 to…
    52Modifier ‑52 (Reduced Services) indicates that a service or procedure was partially reduced or omitted at the provider’s discretion, allowing reporting of the basic procedure number with a qualifier…- Use modifier -52 when a physician or qualified health professional electively reduces or omits part of a procedure or service (for example, performing fewer required views or omitting a portion of…
    53Modifier 53 (Discontinued Procedure) signals that a surgical or diagnostic service was begun by the physician but terminated because of extenuating circumstances that threatened the patient’s…- Use modifier -53 when a physician/qualified healthcare professional has started a surgical or diagnostic procedure (e.g., anesthesia administered, incision or scope insertion) and then discontinues…
    59Modifier 59 indicates a distinct procedural service when two procedures that are not normally billed together are clinically and procedurally separate. The CPT definition (as reiterated by CMS)…- Use modifier -59 to report a distinct procedural service when documentation supports that the procedure reported is not normally billed together with another service on the same day because of a…
    62Modifier 62 indicates that two surgeons function as co‑surgeons, each performing distinct parts of the same primary surgical procedure. It is appended to the primary procedure code (and any…- Use modifier -62 when two surgeons act as co‑surgeons (both primary surgeons) on a single definitive primary procedure, each performing distinct parts of the same surgical procedure (append -62 to…
    80CPT® Modifier 80 (Assistant Surgeon) is appended to a surgical CPT code when a physician (MD or DO) provides full, continuous assistance throughout the operative procedure. It is intended only for…- Use CPT Modifier -80 when a physician (MD or DO) serves as an assistant surgeon and provides full, continuous assistance throughout the entire operative procedure; append -80 to the surgical CPT…

    Related Provider Taxonomies

    8 rows

    Taxonomy Code
    208000000X
    207L00000X
    208600000X
    207RH0000X
    363A00000X
    207VM0101X
    363LA2100X
    163WG0100X

    Related ICD-10-CM Codes

    25 rows

    ICD-10-CM CodeDescription
    C24.1Malignant neoplasm of ampulla of Vater
    E78.5Hyperlipidemia, unspecified
    E87.1Hypo-osmolality and hyponatremia
    K71.7Toxic liver disease with fibrosis and cirrhosis of liver
    K74.60Unspecified cirrhosis of liver
    K74.69Other cirrhosis of liver
    K75.4Autoimmune hepatitis
    K75.9Inflammatory liver disease, unspecified
    K76.9Liver disease, unspecified
    K80.10Calculus of gallbladder with chronic cholecystitis without obstruction

    Showing 1–10 of 25

    Related Payer Policy Updates

    Specialty: Gastroenterology1 / 3

    10 rows

    PolicyPayerEffective Date
    Percutaneous Electrical Nerve Field Stimulation for Functional Abdominal Pain Disordersbcbsvermont2026-12-01
    Esophagogastroduodenoscopy (EGD) Coverage Policyevicore2026-11-05
    Radiofrequency Therapy for Fecal IncontinenceCigna2026-10-15
    Magnetic Sphincter Augmentation for the Treatment of Gastroesophageal Reflux Disease (GERD)univerahealthcare2026-10-15
    High-Resolution Anoscopy (HRA)Premera Bluecross2026-10-01
    Gastroesophageal and Gastrointestinal (GI) Services and ProceduresColorado Rocky Mountain Health Plans2026-10-01
    Fecal Analysis in the Diagnosis of Intestinal Dysbiosis and Fecal Microbiota Transplant TestingOscar Health2026-10-01
    Serum Testing for Hepatic Fibrosis in the Evaluation and Monitoring of Chronic Liver DiseaseOscar Health2026-10-01
    Pancreatic Enzyme Testing for Acute PancreatitisOscar Health2026-10-01
    Helicobacter pylori TestingOscar Health2026-10-01

    Frequently Asked Questions

    References

    1. 1.CPT® Codes and Descriptions. AAPC. Retrieved Aug 11, 2026.Maintains the CPT code set's official descriptions and guidelines, licensed from the American Medical Association, used as the definitional source for CPT codes on this page.
    2. 2.HCPCS Quarterly Update. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's quarterly release of HCPCS Level II codes and short/long descriptors, the source for HCPCS code definitions and update history.
    3. 3.ICD-10-CM Full Code List. Centers for Medicare & Medicaid Services (CMS). Retrieved Aug 11, 2026.CMS's complete ICD-10-CM diagnosis code list, used to cross-reference diagnosis codes associated with this procedure or service.
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